[INFO] cloning repository https://github.com/clemson-cal/app-sedov [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-sedov" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9161d18035ebbc4241380e562386555136849267 [INFO] testing clemson-cal/app-sedov against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/clemson-cal/app-sedov on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/clemson-cal/app-sedov [INFO] finished tweaking git repo https://github.com/clemson-cal/app-sedov [INFO] tweaked toml for git repo https://github.com/clemson-cal/app-sedov written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/clemson-cal/app-sedov already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b4807d4b1ff4fd2b4473114e13723cc87054ccd740b0afa362a744119316a9ec [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b4807d4b1ff4fd2b4473114e13723cc87054ccd740b0afa362a744119316a9ec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b4807d4b1ff4fd2b4473114e13723cc87054ccd740b0afa362a744119316a9ec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b4807d4b1ff4fd2b4473114e13723cc87054ccd740b0afa362a744119316a9ec", kill_on_drop: false }` [INFO] [stdout] b4807d4b1ff4fd2b4473114e13723cc87054ccd740b0afa362a744119316a9ec [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 01c9886597f2d0a7893f62f21810688e7b5e2510524cfd84b6ac71d5bba82f84 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "01c9886597f2d0a7893f62f21810688e7b5e2510524cfd84b6ac71d5bba82f84", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling syn v1.0.45 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling os_str_bytes v2.3.2 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling hydro-euler v0.1.0 (https://github.com/clemson-cal/hydro-euler#13f16f2d) [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.3.0 [INFO] [stderr] Compiling num-rational v0.3.0 [INFO] [stderr] Compiling num-iter v0.1.41 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling lock_api v0.3.4 [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Compiling textwrap v0.12.1 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling aho-corasick v0.7.14 [INFO] [stderr] Compiling parking_lot_core v0.7.2 [INFO] [stderr] Compiling hdf5-types v0.7.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling parking_lot v0.10.2 [INFO] [stderr] Compiling regex v1.4.1 [INFO] [stderr] Compiling num-complex v0.3.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling num v0.3.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-2fc174a7f16eee92/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55af208e8650 - std::backtrace_rs::backtrace::libunwind::trace::h95fc93571932622e [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55af208e8650 - std::backtrace_rs::backtrace::trace_unsynchronized::h4d0b90afc33151fd [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55af208e8650 - std::sys_common::backtrace::_print_fmt::h93d302d001a3bf01 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55af208e8650 - ::fmt::h7881e3a580134f9a [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55af20907efc - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55af208e4f62 - std::io::Write::write_fmt::h24485de26f355188 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x55af208eac75 - std::sys_common::backtrace::_print::h3e3f9fed81bc11e9 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55af208eac75 - std::sys_common::backtrace::print::hd22ac23fed5071c8 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55af208eac75 - std::panicking::default_hook::{{closure}}::h1647bdcf68060e17 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55af208ea7ca - std::panicking::default_hook::hb08853b392b9404b [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55af208eb411 - std::panicking::rust_panic_with_hook::h3624ee29da369ede [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55af208484fe - std::panicking::begin_panic::{{closure}}::h407645c0ccf8adad [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55af2081b249 - std::sys_common::backtrace::__rust_end_short_backtrace::hd7b72a52fc214ddd [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55af2084842b - std::panicking::begin_panic::h9e9e8cb4b84b758d [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55af206c605b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h0ee934170cc36889 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55af206c78c3 - build_script_build::main::h9046d0c67bfb3330 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55af206cdd5b - core::ops::function::FnOnce::call_once::h7802122a67357e32 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55af206d496e - std::sys_common::backtrace::__rust_begin_short_backtrace::h3422e1e6e965eaeb [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55af206d28d1 - std::rt::lang_start::{{closure}}::h2bc196a8499aa5ce [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55af208eb837 - core::ops::function::impls:: for &F>::call_once::h194d6aa01fb6b594 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55af208eb837 - std::panicking::try::do_call::h4ef477456776cccb [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55af208eb837 - std::panicking::try::h7f2121b6bb3bbca4 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55af208eb837 - std::panic::catch_unwind::he974d0ca04309948 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55af208eb837 - std::rt::lang_start_internal::h36e9e78490120b9f [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55af206d28a7 - std::rt::lang_start::h260f42bc0c59bffd [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55af206c8f0a - main [INFO] [stderr] 26: 0x7ff6ba7700b3 - __libc_start_main [INFO] [stderr] 27: 0x55af206c10be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "01c9886597f2d0a7893f62f21810688e7b5e2510524cfd84b6ac71d5bba82f84", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "01c9886597f2d0a7893f62f21810688e7b5e2510524cfd84b6ac71d5bba82f84", kill_on_drop: false }` [INFO] [stdout] 01c9886597f2d0a7893f62f21810688e7b5e2510524cfd84b6ac71d5bba82f84