[INFO] cloning repository https://github.com/chfi/handlegraph-cli [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chfi/handlegraph-cli" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Fhandlegraph-cli", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Fhandlegraph-cli'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] e025fc6f7a22b58bd81a2922283414b276f22a7a [INFO] testing chfi/handlegraph-cli against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Fhandlegraph-cli" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/chfi/handlegraph-cli on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/chfi/handlegraph-cli [INFO] removed path dependency handlegraph from git repo https://github.com/chfi/handlegraph-cli [INFO] finished tweaking git repo https://github.com/chfi/handlegraph-cli [INFO] tweaked toml for git repo https://github.com/chfi/handlegraph-cli written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/chfi/handlegraph-cli already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: dependency (handlegraph) specified without providing a local path, Git repository, or version to use. This will be considered an error in future versions [INFO] [stderr] Updating crates.io index [INFO] [stderr] error: the lock file /workspace/builds/worker-2/source/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag. [INFO] the lockfile is outdated, regenerating it [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: dependency (handlegraph) specified without providing a local path, Git repository, or version to use. This will be considered an error in future versions [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 021eaaa670a388bc1ecb5af922d18d180bc27b2328ae4b88c4a1fb0502225ff9 [INFO] running `Command { std: "docker" "start" "-a" "021eaaa670a388bc1ecb5af922d18d180bc27b2328ae4b88c4a1fb0502225ff9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "021eaaa670a388bc1ecb5af922d18d180bc27b2328ae4b88c4a1fb0502225ff9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "021eaaa670a388bc1ecb5af922d18d180bc27b2328ae4b88c4a1fb0502225ff9", kill_on_drop: false }` [INFO] [stdout] 021eaaa670a388bc1ecb5af922d18d180bc27b2328ae4b88c4a1fb0502225ff9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c95045350bcb6e0c7d28394297915094581a8673428cc468e23203358f90d4a7 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c95045350bcb6e0c7d28394297915094581a8673428cc468e23203358f90d4a7", kill_on_drop: false }` [INFO] [stderr] warning: dependency (handlegraph) specified without providing a local path, Git repository, or version to use. This will be considered an error in future versions [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling futures-core v0.3.8 [INFO] [stderr] Compiling smallvec v1.5.0 [INFO] [stderr] Compiling futures-sink v0.3.8 [INFO] [stderr] Compiling futures-io v0.3.8 [INFO] [stderr] Compiling arrayvec v0.5.2 [INFO] [stderr] Compiling pin-project-lite v0.2.0 [INFO] [stderr] Compiling bytes v0.6.0 [INFO] [stderr] Compiling pin-project-lite v0.1.11 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling tokio v0.3.4 [INFO] [stderr] Compiling instant v0.1.9 [INFO] [stderr] Compiling lock_api v0.4.2 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling bstr v0.2.14 [INFO] [stderr] Compiling bytemuck_derive v1.0.1 [INFO] [stderr] Compiling tokio-macros v0.3.1 [INFO] [stderr] Compiling futures-channel v0.3.8 [INFO] [stderr] Compiling futures-util v0.3.8 [INFO] [stderr] Compiling lexical-core v0.7.4 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling bytemuck v1.4.1 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling mio v0.7.6 [INFO] [stderr] Compiling signal-hook-registry v1.2.2 [INFO] [stderr] Compiling parking_lot_core v0.8.0 [INFO] [stderr] Compiling memmap v0.7.0 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling succinct v0.5.2 [INFO] [stderr] Compiling parking_lot v0.11.1 [INFO] [stderr] Compiling signal-hook v0.1.16 [INFO] [stderr] Compiling crossterm v0.18.2 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling gfa v0.9.0 [INFO] [stderr] Compiling futures-executor v0.3.8 [INFO] [stderr] Compiling futures v0.3.8 [INFO] [stderr] Compiling handlegraph v0.6.0 [INFO] [stderr] Compiling tokio-util v0.5.0 [INFO] [stderr] Compiling handlegraph-cli v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `EventStream`, `Event`, `KeyCode`, `style` [INFO] [stdout] --> src/interface.rs:3:13 [INFO] [stdout] | [INFO] [stdout] 3 | event::{Event, EventStream, KeyCode}, [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^ ^^^^^^^ [INFO] [stdout] 4 | execute, style, terminal, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `io` [INFO] [stdout] --> src/interface.rs:8:13 [INFO] [stdout] | [INFO] [stdout] 8 | use tokio::{io, sync::mpsc}; [INFO] [stdout] | ^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `NodeId`, `handlegraph::HandleGraphRef` [INFO] [stdout] --> src/io.rs:2:28 [INFO] [stdout] | [INFO] [stdout] 2 | handle::{Edge, Handle, NodeId}, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 3 | handlegraph::HandleGraphRef, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `PackedGraphPaths`, `PackedPath`, `StepUpdate` [INFO] [stdout] --> src/io.rs:10:13 [INFO] [stdout] | [INFO] [stdout] 10 | paths::{PackedGraphPaths, PackedPath, StepUpdate}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `GFAParserBuilder`, `GFAResult`, `GFA` [INFO] [stdout] --> src/io.rs:19:17 [INFO] [stdout] | [INFO] [stdout] 19 | gfa::{Line, GFA}, [INFO] [stdout] | ^^^ [INFO] [stdout] 20 | optfields::OptFields, [INFO] [stdout] 21 | parser::{GFAParser, GFAParserBuilder, GFAResult}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BString`, `ByteVec` [INFO] [stdout] --> src/io.rs:25:12 [INFO] [stdout] | [INFO] [stdout] 25 | use bstr::{BString, ByteVec}; [INFO] [stdout] | ^^^^^^^ ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `LoadGFAView` [INFO] [stdout] --> src/io.rs:29:36 [INFO] [stdout] | [INFO] [stdout] 29 | use crate::interface::{LoadGFAMsg, LoadGFAView}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `LineIndices`, `LineType` [INFO] [stdout] --> src/io.rs:30:23 [INFO] [stdout] | [INFO] [stdout] 30 | use crate::mmap_gfa::{LineIndices, LineType, MmapGFA}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `AsyncBufRead`, `AsyncRead`, `AsyncSeek`, `self`, `time::sleep` [INFO] [stdout] --> src/io.rs:37:9 [INFO] [stdout] | [INFO] [stdout] 37 | self, AsyncBufRead, AsyncBufReadExt, AsyncRead, AsyncSeek, [INFO] [stdout] | ^^^^ ^^^^^^^^^^^^ ^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 40 | time::sleep, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `GFAParserBuilder`, `GFAResult`, `GFA`, `gfa as gfa_types`, `optfields::OptFields` [INFO] [stdout] --> src/mmap_gfa.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | gfa as gfa_types, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] 3 | // gfa::{Line, Link, Orientation, Path, Segment, GFA}, [INFO] [stdout] 4 | gfa::{Line, GFA}, [INFO] [stdout] | ^^^ [INFO] [stdout] 5 | optfields::OptFields, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 6 | parser::{GFAParser, GFAParserBuilder, GFAResult}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/mmap_gfa.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bstr::io::*` [INFO] [stdout] --> src/mmap_gfa.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use bstr::io::*; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ByteVec` [INFO] [stdout] --> src/mmap_gfa.rs:19:23 [INFO] [stdout] | [INFO] [stdout] 19 | use bstr::{ByteSlice, ByteVec}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/io.rs:135:9 [INFO] [stdout] | [INFO] [stdout] 135 | let mut paths: HashMap> = [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0616]: field `nodes` of struct `PackedGraph` is private [INFO] [stdout] --> src/io.rs:293:19 [INFO] [stdout] | [INFO] [stdout] 293 | graph.nodes.save_diagnostics(node_path)?; [INFO] [stdout] | ^^^^^ private field [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `save_diagnostics` found for struct `NodeRecords` in the current scope [INFO] [stdout] --> src/io.rs:293:25 [INFO] [stdout] | [INFO] [stdout] 293 | graph.nodes.save_diagnostics(node_path)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ method not found in `NodeRecords` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0616]: field `edges` of struct `PackedGraph` is private [INFO] [stdout] --> src/io.rs:298:19 [INFO] [stdout] | [INFO] [stdout] 298 | graph.edges.save_diagnostics(edge_path)?; [INFO] [stdout] | ^^^^^ private field [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `save_diagnostics` found for struct `EdgeLists` in the current scope [INFO] [stdout] --> src/io.rs:298:25 [INFO] [stdout] | [INFO] [stdout] 298 | graph.edges.save_diagnostics(edge_path)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ method not found in `EdgeLists` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0616]: field `nodes` of struct `PackedGraph` is private [INFO] [stdout] --> src/io.rs:304:11 [INFO] [stdout] | [INFO] [stdout] 304 | graph.nodes.save_diagnostics(node_path)?; [INFO] [stdout] | ^^^^^ private field [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `save_diagnostics` found for struct `NodeRecords` in the current scope [INFO] [stdout] --> src/io.rs:304:17 [INFO] [stdout] | [INFO] [stdout] 304 | graph.nodes.save_diagnostics(node_path)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ method not found in `NodeRecords` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0616]: field `edges` of struct `PackedGraph` is private [INFO] [stdout] --> src/io.rs:309:11 [INFO] [stdout] | [INFO] [stdout] 309 | graph.edges.save_diagnostics(edge_path)?; [INFO] [stdout] | ^^^^^ private field [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no method named `save_diagnostics` found for struct `EdgeLists` in the current scope [INFO] [stdout] --> src/io.rs:309:17 [INFO] [stdout] | [INFO] [stdout] 309 | graph.edges.save_diagnostics(edge_path)?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ method not found in `EdgeLists` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `optfields::OptFields` [INFO] [stdout] --> src/io.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | optfields::OptFields, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 8 previous errors; 15 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0599, E0616. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0599`. [INFO] [stdout] [INFO] [stderr] error: could not compile `handlegraph-cli` [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "c95045350bcb6e0c7d28394297915094581a8673428cc468e23203358f90d4a7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c95045350bcb6e0c7d28394297915094581a8673428cc468e23203358f90d4a7", kill_on_drop: false }` [INFO] [stdout] c95045350bcb6e0c7d28394297915094581a8673428cc468e23203358f90d4a7