[INFO] cloning repository https://github.com/10XGenomics/bamtofastq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/bamtofastq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6ecf67d596c27fb04ce1348aa78396caafab393f
[INFO] testing 10XGenomics/bamtofastq against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/bamtofastq on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] finished tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] tweaked toml for git repo https://github.com/10XGenomics/bamtofastq written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/bamtofastq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] da59100bfbaa9d81ac7658ec819804a81c21d1acbc66895909e11677b2d4d6ec
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "da59100bfbaa9d81ac7658ec819804a81c21d1acbc66895909e11677b2d4d6ec", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "da59100bfbaa9d81ac7658ec819804a81c21d1acbc66895909e11677b2d4d6ec", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "da59100bfbaa9d81ac7658ec819804a81c21d1acbc66895909e11677b2d4d6ec", kill_on_drop: false }`
[INFO] [stdout] da59100bfbaa9d81ac7658ec819804a81c21d1acbc66895909e11677b2d4d6ec
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f40689d834e31937a32caf374cc2890d220d16d8460f1bca69782d66c1423a32
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f40689d834e31937a32caf374cc2890d220d16d8460f1bca69782d66c1423a32", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.39
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling serde_derive v1.0.113
[INFO] [stderr]    Compiling serde v1.0.113
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bindgen v0.53.3
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling lazycell v1.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling gimli v0.21.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.8
[INFO] [stderr]    Compiling tinyvec v0.3.3
[INFO] [stderr]    Compiling object v0.20.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strsim v0.9.3
[INFO] [stderr]    Compiling min-max-heap v1.3.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling lz4-sys v1.9.2
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling clang-sys v0.29.3
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.31+curl-7.70.0
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling miniz_oxide v0.3.7
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling unreachable v0.1.1
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling unicode-normalization v0.1.13
[INFO] [stderr]    Compiling proc-macro2 v1.0.18
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling tempdir v0.3.7
[INFO] [stderr]    Compiling crossbeam-channel v0.4.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling url v2.1.1
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling ordered-float v0.3.0
[INFO] [stderr]    Compiling addr2line v0.12.1
[INFO] [stderr]    Compiling backtrace v0.3.49
[INFO] [stderr]    Compiling uuid v0.8.1
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling os_type v2.2.0
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling failure v0.1.8
[INFO] [stderr]    Compiling snafu v0.6.0
[INFO] [stderr]    Compiling hts-sys v1.10.2
[INFO] [stderr]    Compiling lz4 v1.23.2
[INFO] [stderr]    Compiling bincode v1.2.1
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling toml v0.5.6
[INFO] [stderr]    Compiling serde_bytes v0.11.5
[INFO] [stderr]    Compiling docopt v1.1.0
[INFO] [stderr]    Compiling shardio v0.7.1 (https://github.com/10XGenomics/rust-shardio.git#1f5f0e95)
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling human-panic v1.0.3
[INFO] [stderr]    Compiling rust-htslib v0.30.0
[INFO] [stderr]    Compiling bamtofastq v1.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 16s
[INFO] running `Command { std: "docker" "inspect" "f40689d834e31937a32caf374cc2890d220d16d8460f1bca69782d66c1423a32", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f40689d834e31937a32caf374cc2890d220d16d8460f1bca69782d66c1423a32", kill_on_drop: false }`
[INFO] [stdout] f40689d834e31937a32caf374cc2890d220d16d8460f1bca69782d66c1423a32
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] a0d536c8a369f81b040921523ce18ed6a7a5247249989357dec22b0ca49172dc
[INFO] running `Command { std: "docker" "start" "-a" "a0d536c8a369f81b040921523ce18ed6a7a5247249989357dec22b0ca49172dc", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamtofastq v1.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 11.31s
[INFO] running `Command { std: "docker" "inspect" "a0d536c8a369f81b040921523ce18ed6a7a5247249989357dec22b0ca49172dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a0d536c8a369f81b040921523ce18ed6a7a5247249989357dec22b0ca49172dc", kill_on_drop: false }`
[INFO] [stdout] a0d536c8a369f81b040921523ce18ed6a7a5247249989357dec22b0ca49172dc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 627c6caaed7d0bc9c069177764c504a27fe4c372c6c630949ebaa8b7b31010b6
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "627c6caaed7d0bc9c069177764c504a27fe4c372c6c630949ebaa8b7b31010b6", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/bamtofastq-e5430f7f97227c07
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::unpaired_record ... ok
[INFO] [stdout] test tests::bad_bam ... ok
[INFO] [stdout] test tests::wrong_header ... ok
[INFO] [stdout] test tests::test_lr20 ... ok
[INFO] [stdout] test tests::test_lr21 ... ok
[INFO] [stdout] test tests::test_cr12 ... ok
[INFO] [stdout] test tests::test_cr12_v1 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "627c6caaed7d0bc9c069177764c504a27fe4c372c6c630949ebaa8b7b31010b6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "627c6caaed7d0bc9c069177764c504a27fe4c372c6c630949ebaa8b7b31010b6", kill_on_drop: false }`
[INFO] [stdout] 627c6caaed7d0bc9c069177764c504a27fe4c372c6c630949ebaa8b7b31010b6