[INFO] fetching crate flann 0.1.0... [INFO] checking flann-0.1.0 against try#6f12b8fe67b4eed2e838dab803ed9493b9d62c0f for pr-79073 [INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-14/source [INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain 6f12b8fe67b4eed2e838dab803ed9493b9d62c0f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann 0.1.0 [INFO] finished tweaking crates.io crate flann 0.1.0 [INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-14/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded flann-sys v0.1.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9163878b328f0f023ceb997d781a7f6dd2fab6866f73f7c0a73ddbf98f9c7f2b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9163878b328f0f023ceb997d781a7f6dd2fab6866f73f7c0a73ddbf98f9c7f2b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9163878b328f0f023ceb997d781a7f6dd2fab6866f73f7c0a73ddbf98f9c7f2b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9163878b328f0f023ceb997d781a7f6dd2fab6866f73f7c0a73ddbf98f9c7f2b", kill_on_drop: false }` [INFO] [stdout] 9163878b328f0f023ceb997d781a7f6dd2fab6866f73f7c0a73ddbf98f9c7f2b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c2ad65e38f9ba9b8d20e23d3a3a5594914316a71cac4de9e680f3db5cbfd8dfc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c2ad65e38f9ba9b8d20e23d3a3a5594914316a71cac4de9e680f3db5cbfd8dfc", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling syn v1.0.50 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling cc v1.0.65 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking assert_approx_eq v1.1.0 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Checking backtrace v0.3.55 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-bfbae567538d48e1/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-7e12402c0c967715/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-7e12402c0c967715/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-7e12402c0c967715/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x565225a5b170 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x565225a5b170 - std::backtrace_rs::backtrace::trace_unsynchronized::h2d26397c5720fdbb [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x565225a5b170 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x565225a5b170 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x565225a80bec - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x565225a56fe2 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x565225a5de35 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x565225a5de35 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x565225a5de35 - std::panicking::default_hook::{{closure}}::h5b7294ca19e8edab [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x565225a5d98a - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x565225a5e5d1 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x565225a5e117 - std::panicking::begin_panic_handler::{{closure}}::h56ae74c6dea6e141 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:497:13 [INFO] [stderr] 12: 0x565225a5b60c - std::sys_common::backtrace::__rust_end_short_backtrace::h3c4721f56689fae4 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x565225a5e079 - rust_begin_unwind [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x565225a5e02b - std::panicking::begin_panic_fmt::h447a9fe10c3ac155 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:435:5 [INFO] [stderr] 15: 0x565225532334 - cmake::fail::h0097b8ac3463d791 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] 16: 0x565225531ca7 - cmake::run::h08302fb82a05df26 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9 [INFO] [stderr] 17: 0x56522552dff1 - cmake::Config::build::h2d21b5fe0e95f2a5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:707:13 [INFO] [stderr] 18: 0x5652255283ef - build_script_build::main::h8cea578e2203e586 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30:19 [INFO] [stderr] 19: 0x565225528e9b - core::ops::function::FnOnce::call_once::h6b0ed98084290db8 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x565225528d0e - std::sys_common::backtrace::__rust_begin_short_backtrace::h5b9ef46fedecbbcf [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 21: 0x56522552aa71 - std::rt::lang_start::{{closure}}::h337967646e622e86 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/rt.rs:66:18 [INFO] [stderr] 22: 0x565225a5e9f7 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x565225a5e9f7 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:379:40 [INFO] [stderr] 24: 0x565225a5e9f7 - std::panicking::try::h068087b173f80a49 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:343:19 [INFO] [stderr] 25: 0x565225a5e9f7 - std::panic::catch_unwind::h1f8259807e825279 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panic.rs:396:14 [INFO] [stderr] 26: 0x565225a5e9f7 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x56522552aa47 - std::rt::lang_start::hb1315a10f2bfd8ba [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/rt.rs:65:5 [INFO] [stderr] 28: 0x56522552883a - main [INFO] [stderr] 29: 0x7f0da46910b3 - __libc_start_main [INFO] [stderr] 30: 0x5652255280ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "c2ad65e38f9ba9b8d20e23d3a3a5594914316a71cac4de9e680f3db5cbfd8dfc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c2ad65e38f9ba9b8d20e23d3a3a5594914316a71cac4de9e680f3db5cbfd8dfc", kill_on_drop: false }` [INFO] [stdout] c2ad65e38f9ba9b8d20e23d3a3a5594914316a71cac4de9e680f3db5cbfd8dfc