[INFO] cloning repository https://github.com/informationsea/sequencetoolkit [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f3273e476fe4ec0c5e74886ff10f6ca81ccd1266 [INFO] checking informationsea/sequencetoolkit against try#6f12b8fe67b4eed2e838dab803ed9493b9d62c0f for pr-79073 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain 6f12b8fe67b4eed2e838dab803ed9493b9d62c0f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit [INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit [INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded jobserver v0.1.21 [INFO] [stderr] Downloaded zstd-safe v2.0.5+zstd.1.4.5 [INFO] [stderr] Downloaded flate2 v1.0.17 [INFO] [stderr] Downloaded cc v1.0.60 [INFO] [stderr] Downloaded lz4 v1.23.2 [INFO] [stderr] Downloaded regex-automata v0.1.9 [INFO] [stderr] Downloaded bit-vec v0.6.2 [INFO] [stderr] Downloaded bv v0.11.1 [INFO] [stderr] Downloaded bio-types v0.7.0 [INFO] [stderr] Downloaded ordermap v0.3.5 [INFO] [stderr] Downloaded ordered-float v1.1.0 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded proc-macro2 v1.0.21 [INFO] [stderr] Downloaded nom v5.1.2 [INFO] [stderr] Downloaded doc-comment v0.3.3 [INFO] [stderr] Downloaded bit-set v0.5.2 [INFO] [stderr] Downloaded libc v0.2.77 [INFO] [stderr] Downloaded brotli-decompressor v2.3.1 [INFO] [stderr] Downloaded lz4-sys v1.9.2 [INFO] [stderr] Downloaded ndarray v0.13.1 [INFO] [stderr] Downloaded bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Downloaded syn v1.0.41 [INFO] [stderr] Downloaded csv v1.1.3 [INFO] [stderr] Downloaded alloc-stdlib v0.2.1 [INFO] [stderr] Downloaded xz2 v0.1.6 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded fixedbitset v0.1.9 [INFO] [stderr] Downloaded autocompress v0.1.0 [INFO] [stderr] Downloaded vcf v0.4.0 [INFO] [stderr] Downloaded bindgen v0.53.3 [INFO] [stderr] Downloaded csv-core v0.1.10 [INFO] [stderr] Downloaded multimap v0.6.0 [INFO] [stderr] Downloaded alloc-no-stdlib v2.0.1 [INFO] [stderr] Downloaded miniz_oxide v0.4.2 [INFO] [stderr] Downloaded xlsxwriter v0.3.1 [INFO] [stderr] Downloaded statrs v0.12.0 [INFO] [stderr] Downloaded snafu v0.6.8 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded bio v0.30.1 [INFO] [stderr] Downloaded lzma-sys v0.1.16 [INFO] [stderr] Downloaded petgraph v0.4.13 [INFO] [stderr] Downloaded snap v1.0.1 [INFO] [stderr] Downloaded snafu-derive v0.6.8 [INFO] [stderr] Downloaded brotli v3.3.0 [INFO] [stderr] Downloaded zstd-sys v1.4.17+zstd.1.4.5 [INFO] [stderr] Downloaded libxlsxwriter-sys v0.9.4 [INFO] [stderr] Downloaded zstd v0.5.3+zstd.1.4.5 [INFO] [stderr] Downloaded bio-types v0.6.0 [INFO] [stderr] Downloaded bgzip v0.1.0 [INFO] [stderr] Downloaded bytecount v0.6.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] dc0f7f21fb08ef2dceed0a53afb8031a25d8f9e5c93a1b31fd760eb80076fd98 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "dc0f7f21fb08ef2dceed0a53afb8031a25d8f9e5c93a1b31fd760eb80076fd98", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "dc0f7f21fb08ef2dceed0a53afb8031a25d8f9e5c93a1b31fd760eb80076fd98", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dc0f7f21fb08ef2dceed0a53afb8031a25d8f9e5c93a1b31fd760eb80076fd98", kill_on_drop: false }` [INFO] [stdout] dc0f7f21fb08ef2dceed0a53afb8031a25d8f9e5c93a1b31fd760eb80076fd98 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5f99edd6b19636bfdb8782f8b4b858d74420a3677685c46be5d8e80d6333e8b5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5f99edd6b19636bfdb8782f8b4b858d74420a3677685c46be5d8e80d6333e8b5", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling bindgen v0.53.3 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Checking gimli v0.22.0 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking alloc-no-stdlib v2.0.1 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking object v0.20.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling snap v1.0.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Compiling bio v0.30.1 [INFO] [stderr] Checking termcolor v1.1.0 [INFO] [stderr] Checking fixedbitset v0.1.9 [INFO] [stderr] Checking bit-vec v0.6.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Compiling clang-sys v0.29.3 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking alloc-stdlib v0.2.1 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Checking brotli-decompressor v2.3.1 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling lexical-core v0.7.4 [INFO] [stderr] Checking aho-corasick v0.7.13 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking getrandom v0.1.15 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Compiling cc v1.0.60 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking brotli v3.3.0 [INFO] [stderr] Checking addr2line v0.13.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.1.0 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking backtrace v0.3.50 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling zstd-sys v1.4.17+zstd.1.4.5 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lz4-sys v1.9.2 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Checking pretty_env_logger v0.4.0 [INFO] [stderr] Checking xz2 v0.1.6 [INFO] [stderr] Checking bzip2 v0.3.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Checking lz4 v1.23.2 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling snafu-derive v0.6.8 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Checking bgzip v0.1.0 [INFO] [stderr] Checking vcf v0.4.0 [INFO] [stderr] Checking snafu v0.6.8 [INFO] [stderr] Checking bstr v0.2.13 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.6.0 [INFO] [stderr] Checking bio-types v0.7.0 [INFO] [stderr] Checking serde_json v1.0.57 [INFO] [stderr] Checking bincode v1.3.1 [INFO] [stderr] Checking bio-types v0.6.0 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking zstd-safe v2.0.5+zstd.1.4.5 [INFO] [stderr] Checking zstd v0.5.3+zstd.1.4.5 [INFO] [stderr] Checking autocompress v0.1.0 [INFO] [stderr] Compiling libxlsxwriter-sys v0.9.4 [INFO] [stderr] Checking xlsxwriter v0.3.1 [INFO] [stderr] Checking sequencetoolkit v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 4m 18s [INFO] running `Command { std: "docker" "inspect" "5f99edd6b19636bfdb8782f8b4b858d74420a3677685c46be5d8e80d6333e8b5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5f99edd6b19636bfdb8782f8b4b858d74420a3677685c46be5d8e80d6333e8b5", kill_on_drop: false }` [INFO] [stdout] 5f99edd6b19636bfdb8782f8b4b858d74420a3677685c46be5d8e80d6333e8b5