[INFO] cloning repository https://github.com/clemson-cal/app-sedov [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-sedov" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9161d18035ebbc4241380e562386555136849267 [INFO] checking clemson-cal/app-sedov against try#6f12b8fe67b4eed2e838dab803ed9493b9d62c0f for pr-79073 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/clemson-cal/app-sedov on toolchain 6f12b8fe67b4eed2e838dab803ed9493b9d62c0f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/clemson-cal/app-sedov [INFO] finished tweaking git repo https://github.com/clemson-cal/app-sedov [INFO] tweaked toml for git repo https://github.com/clemson-cal/app-sedov written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/clemson-cal/app-sedov already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/clemson-cal/godunov-core` [INFO] [stderr] Updating git repository `https://github.com/clemson-cal/hydro-euler` [INFO] [stderr] Updating git repository `https://github.com/clemson-cal/kind-config` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded hdf5-sys v0.7.0 [INFO] [stderr] Downloaded hdf5-types v0.7.0 [INFO] [stderr] Downloaded hdf5-derive v0.7.0 [INFO] [stderr] Downloaded hdf5 v0.7.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1a369909478eb6e6a656cb1de07823230d69e79f95148b61ae66e8c9db938acd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1a369909478eb6e6a656cb1de07823230d69e79f95148b61ae66e8c9db938acd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1a369909478eb6e6a656cb1de07823230d69e79f95148b61ae66e8c9db938acd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1a369909478eb6e6a656cb1de07823230d69e79f95148b61ae66e8c9db938acd", kill_on_drop: false }` [INFO] [stdout] 1a369909478eb6e6a656cb1de07823230d69e79f95148b61ae66e8c9db938acd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+6f12b8fe67b4eed2e838dab803ed9493b9d62c0f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 25db242481ff174a5b761cc226647a58622c831479fb36e4fd0a87b18099c725 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "25db242481ff174a5b761cc226647a58622c831479fb36e4fd0a87b18099c725", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling syn v1.0.45 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling regex-syntax v0.6.20 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking smallvec v1.4.2 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking termcolor v1.1.0 [INFO] [stderr] Checking hydro-euler v0.1.0 (https://github.com/clemson-cal/hydro-euler#13f16f2d) [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking textwrap v0.12.1 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.3.0 [INFO] [stderr] Compiling num-rational v0.3.0 [INFO] [stderr] Compiling num-iter v0.1.41 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling aho-corasick v0.7.14 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking num-complex v0.3.0 [INFO] [stderr] Compiling regex v1.4.1 [INFO] [stderr] Checking num v0.3.0 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking godunov-core v0.1.0 (https://github.com/clemson-cal/godunov-core#e3ddfe50) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-2fc174a7f16eee92/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ee59bbfd60 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55ee59bbfd60 - std::backtrace_rs::backtrace::trace_unsynchronized::h2d26397c5720fdbb [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55ee59bbfd60 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55ee59bbfd60 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55ee59bddd6c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55ee59bbc852 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x55ee59bc2385 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55ee59bc2385 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55ee59bc2385 - std::panicking::default_hook::{{closure}}::h5b7294ca19e8edab [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55ee59bc1eda - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55ee59bc2b21 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55ee59b1e6be - std::panicking::begin_panic::{{closure}}::hcd2bd10c413d894b [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55ee59af0d29 - std::sys_common::backtrace::__rust_end_short_backtrace::h5e575efacc5c0eb3 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55ee59b1e5eb - std::panicking::begin_panic::h70660cd3a1c0821c [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55ee5999d05b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h0ee934170cc36889 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55ee5999e8c3 - build_script_build::main::h9046d0c67bfb3330 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55ee599a4ecb - core::ops::function::FnOnce::call_once::h7802122a67357e32 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55ee599ab8ce - std::sys_common::backtrace::__rust_begin_short_backtrace::hf62d96129404ff6b [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55ee599a98d1 - std::rt::lang_start::{{closure}}::hda3df3f02ce5356d [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55ee59bc2f47 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55ee59bc2f47 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55ee59bc2f47 - std::panicking::try::h068087b173f80a49 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55ee59bc2f47 - std::panic::catch_unwind::h1f8259807e825279 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55ee59bc2f47 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55ee599a98a7 - std::rt::lang_start::he7b99c680cd95ea7 [INFO] [stderr] at /rustc/6f12b8fe67b4eed2e838dab803ed9493b9d62c0f/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55ee5999ff0a - main [INFO] [stderr] 26: 0x7f298e5890b3 - __libc_start_main [INFO] [stderr] 27: 0x55ee599980be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "25db242481ff174a5b761cc226647a58622c831479fb36e4fd0a87b18099c725", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "25db242481ff174a5b761cc226647a58622c831479fb36e4fd0a87b18099c725", kill_on_drop: false }` [INFO] [stdout] 25db242481ff174a5b761cc226647a58622c831479fb36e4fd0a87b18099c725