[INFO] fetching crate d4utils 0.1.15... [INFO] checking d4utils-0.1.15 against master#c919f490bbcd2b29b74016101f7ec71aaa24bdbb for pr-79073 [INFO] extracting crate d4utils 0.1.15 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate d4utils 0.1.15 on toolchain c919f490bbcd2b29b74016101f7ec71aaa24bdbb [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4utils 0.1.15 [INFO] finished tweaking crates.io crate d4utils 0.1.15 [INFO] tweaked toml for crates.io crate d4utils 0.1.15 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate d4utils 0.1.15 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c1de7086a980be3a28770cf93aeedb179349592cbfba8cbaf20431fe310f6c9b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c1de7086a980be3a28770cf93aeedb179349592cbfba8cbaf20431fe310f6c9b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c1de7086a980be3a28770cf93aeedb179349592cbfba8cbaf20431fe310f6c9b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c1de7086a980be3a28770cf93aeedb179349592cbfba8cbaf20431fe310f6c9b", kill_on_drop: false }` [INFO] [stdout] c1de7086a980be3a28770cf93aeedb179349592cbfba8cbaf20431fe310f6c9b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 05f2ce943070eef628767cb4a560806f784bc18d754695d87cb96da5e417c7e3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "05f2ce943070eef628767cb4a560806f784bc18d754695d87cb96da5e417c7e3", kill_on_drop: false }` [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling syn v1.0.48 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.0 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Compiling clang-sys v1.0.1 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking flate2 v1.0.19 [INFO] [stderr] Checking crossbeam-epoch v0.9.0 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Checking d4-framefile v0.1.15 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Compiling d4-hts v0.1.15 [INFO] [stderr] Compiling d4-bigwig v0.1.15 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.15` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-9ed42dbb396f5682/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-f1d97a5d915cef78/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-f1d97a5d915cef78/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.15/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55861fae80f0 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55861fae80f0 - std::backtrace_rs::backtrace::trace_unsynchronized::h2d26397c5720fdbb [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55861fae80f0 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55861fae80f0 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55861fb0cd3c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55861fae4432 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x55861faeab45 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55861faeab45 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55861faeab45 - std::panicking::default_hook::{{closure}}::h5b7294ca19e8edab [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55861faea69a - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55861faeb2e1 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55861f88ab7e - std::panicking::begin_panic::{{closure}}::he3d7732378ff4176 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55861f85d059 - std::sys_common::backtrace::__rust_end_short_backtrace::h9053ba42664a4087 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55861f88aaab - std::panicking::begin_panic::h03ef605202fe0ac2 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55861f52b9c1 - build_script_build::build_own_htslib::h844697106a051dfb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.15/build.rs:34:5 [INFO] [stderr] 15: 0x55861f52be94 - build_script_build::main::h3cf9df874835cfed [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.15/build.rs:66:9 [INFO] [stderr] 16: 0x55861f52d43b - core::ops::function::FnOnce::call_once::hfe6e15741854a96e [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55861f52cc2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h993f05f51053fea5 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55861f52d1f1 - std::rt::lang_start::{{closure}}::h2ab16261df7451ee [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55861faeb7f7 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55861faeb7f7 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55861faeb7f7 - std::panicking::try::h068087b173f80a49 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55861faeb7f7 - std::panic::catch_unwind::h1f8259807e825279 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55861faeb7f7 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55861f52d1c7 - std::rt::lang_start::h2e2261d91bf30b28 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55861f52c4ca - main [INFO] [stderr] 26: 0x7fc8f671b0b3 - __libc_start_main [INFO] [stderr] 27: 0x55861f52b0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "05f2ce943070eef628767cb4a560806f784bc18d754695d87cb96da5e417c7e3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "05f2ce943070eef628767cb4a560806f784bc18d754695d87cb96da5e417c7e3", kill_on_drop: false }` [INFO] [stdout] 05f2ce943070eef628767cb4a560806f784bc18d754695d87cb96da5e417c7e3