[INFO] fetching crate cartograph 0.1.2... [INFO] checking cartograph-0.1.2 against master#c919f490bbcd2b29b74016101f7ec71aaa24bdbb for pr-79073 [INFO] extracting crate cartograph 0.1.2 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate cartograph 0.1.2 on toolchain c919f490bbcd2b29b74016101f7ec71aaa24bdbb [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate cartograph 0.1.2 [INFO] finished tweaking crates.io crate cartograph 0.1.2 [INFO] tweaked toml for crates.io crate cartograph 0.1.2 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate cartograph 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ndarray-parallel v0.9.1 [INFO] [stderr] Downloaded noisy_float v0.1.13 [INFO] [stderr] Downloaded json5 v0.2.8 [INFO] [stderr] Downloaded terminal_size v0.1.13 [INFO] [stderr] Downloaded colored v2.0.0 [INFO] [stderr] Downloaded hdf5-sys v0.7.0 [INFO] [stderr] Downloaded rand_distr v0.3.0 [INFO] [stderr] Downloaded simba v0.3.1 [INFO] [stderr] Downloaded encode_unicode v0.3.6 [INFO] [stderr] Downloaded arctk-attr v0.2.0 [INFO] [stderr] Downloaded matrixmultiply v0.2.3 [INFO] [stderr] Downloaded rawpointer v0.2.1 [INFO] [stderr] Downloaded indicatif v0.15.0 [INFO] [stderr] Downloaded netcdf v0.5.2 [INFO] [stderr] Downloaded phf_codegen v0.8.0 [INFO] [stderr] Downloaded netcdf-sys v0.3.3 [INFO] [stderr] Downloaded libm v0.2.1 [INFO] [stderr] Downloaded ndarray v0.12.1 [INFO] [stderr] Downloaded arctk v0.11.1 [INFO] [stderr] Downloaded palette_derive v0.5.0 [INFO] [stderr] Downloaded ansi_rgb v0.2.0 [INFO] [stderr] Downloaded console v0.13.0 [INFO] [stderr] Downloaded number_prefix v0.3.0 [INFO] [stderr] Downloaded arctk-proc v0.2.0 [INFO] [stderr] Downloaded phf_generator v0.8.0 [INFO] [stderr] Downloaded palette v0.5.0 [INFO] [stderr] Downloaded phf_shared v0.8.0 [INFO] [stderr] Downloaded slice-of-array v0.2.1 [INFO] [stderr] Downloaded approx v0.4.0 [INFO] [stderr] Downloaded paste v1.0.2 [INFO] [stderr] Downloaded phf v0.8.0 [INFO] [stderr] Downloaded ndarray v0.13.1 [INFO] [stderr] Downloaded nalgebra v0.23.0 [INFO] [stderr] Downloaded ndarray-stats v0.3.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a885b0bd54b6561924b434622803c27c30583c89a8f701ff1365c34fec83df18 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a885b0bd54b6561924b434622803c27c30583c89a8f701ff1365c34fec83df18", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a885b0bd54b6561924b434622803c27c30583c89a8f701ff1365c34fec83df18", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a885b0bd54b6561924b434622803c27c30583c89a8f701ff1365c34fec83df18", kill_on_drop: false }` [INFO] [stdout] a885b0bd54b6561924b434622803c27c30583c89a8f701ff1365c34fec83df18 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f5ecd36dfca88e98a88d79a6ee0fc3009d710980e7c40c9afc6eb513c391cfee [INFO] running `Command { std: "docker" "start" "-a" "f5ecd36dfca88e98a88d79a6ee0fc3009d710980e7c40c9afc6eb513c391cfee", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.48 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking regex-syntax v0.6.21 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Checking libc v0.2.80 [INFO] [stderr] Checking libm v0.2.1 [INFO] [stderr] Checking memchr v2.3.4 [INFO] [stderr] Checking typenum v1.12.0 [INFO] [stderr] Checking matrixmultiply v0.1.15 [INFO] [stderr] Checking ryu v1.0.5 [INFO] [stderr] Checking bitflags v1.2.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.0 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking terminal_size v0.1.13 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking colored v2.0.0 [INFO] [stderr] Checking generic-array v0.14.4 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking crossbeam-epoch v0.9.0 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-39ecfd15456369e6/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x556d9f646d60 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x556d9f646d60 - std::backtrace_rs::backtrace::trace_unsynchronized::h2d26397c5720fdbb [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x556d9f646d60 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x556d9f646d60 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x556d9f664d6c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x556d9f643852 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x556d9f649385 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x556d9f649385 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x556d9f649385 - std::panicking::default_hook::{{closure}}::h5b7294ca19e8edab [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x556d9f648eda - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x556d9f649b21 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x556d9f5a2f9e - std::panicking::begin_panic::{{closure}}::he3d7732378ff4176 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x556d9f575609 - std::sys_common::backtrace::__rust_end_short_backtrace::h9053ba42664a4087 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x556d9f5a2ecb - std::panicking::begin_panic::h03ef605202fe0ac2 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x556d9f42405b - build_script_build::LibrarySearcher::try_locate_hdf5_library::hfb8bdd9ca559e541 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x556d9f4258c3 - build_script_build::main::h8176117994d32a7f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x556d9f42bf1b - core::ops::function::FnOnce::call_once::hffcb62ada297cf00 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x556d9f43292e - std::sys_common::backtrace::__rust_begin_short_backtrace::hf80dd12d61366d9a [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x556d9f4308e1 - std::rt::lang_start::{{closure}}::h02d21eebfc7d9e2e [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x556d9f649f47 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x556d9f649f47 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x556d9f649f47 - std::panicking::try::h068087b173f80a49 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x556d9f649f47 - std::panic::catch_unwind::h1f8259807e825279 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x556d9f649f47 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x556d9f4308b7 - std::rt::lang_start::h372eb32326e42f06 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x556d9f426f0a - main [INFO] [stderr] 26: 0x7f5af2b7a0b3 - __libc_start_main [INFO] [stderr] 27: 0x556d9f41f0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "f5ecd36dfca88e98a88d79a6ee0fc3009d710980e7c40c9afc6eb513c391cfee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f5ecd36dfca88e98a88d79a6ee0fc3009d710980e7c40c9afc6eb513c391cfee", kill_on_drop: false }` [INFO] [stdout] f5ecd36dfca88e98a88d79a6ee0fc3009d710980e7c40c9afc6eb513c391cfee