[INFO] cloning repository https://github.com/oicr-gsi/barcodex-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/oicr-gsi/barcodex-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 192d1d201dd44715945965621224021ec55e1c43
[INFO] checking oicr-gsi/barcodex-rs against master#c919f490bbcd2b29b74016101f7ec71aaa24bdbb for pr-79073
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs" "/workspace/builds/worker-7/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/oicr-gsi/barcodex-rs on toolchain c919f490bbcd2b29b74016101f7ec71aaa24bdbb
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/oicr-gsi/barcodex-rs
[INFO] finished tweaking git repo https://github.com/oicr-gsi/barcodex-rs
[INFO] tweaked toml for git repo https://github.com/oicr-gsi/barcodex-rs written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate git repo https://github.com/oicr-gsi/barcodex-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] error: the lock file /workspace/builds/worker-7/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] d9835f3163480111cc4b64bbb79c24a9e706acb4bacd9a0e8c6ed505caebe2a0
[INFO] running `Command { std: "docker" "start" "-a" "d9835f3163480111cc4b64bbb79c24a9e706acb4bacd9a0e8c6ed505caebe2a0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d9835f3163480111cc4b64bbb79c24a9e706acb4bacd9a0e8c6ed505caebe2a0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d9835f3163480111cc4b64bbb79c24a9e706acb4bacd9a0e8c6ed505caebe2a0", kill_on_drop: false }`
[INFO] [stdout] d9835f3163480111cc4b64bbb79c24a9e706acb4bacd9a0e8c6ed505caebe2a0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] a6e584171a4505344a04532e10472a72c2d40c211c4bb3d5210c2de779846563
[INFO] running `Command { std: "docker" "start" "-a" "a6e584171a4505344a04532e10472a72c2d40c211c4bb3d5210c2de779846563", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.51
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]     Checking ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking itoa v0.4.6
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]     Checking bit-vec v0.6.2
[INFO] [stderr]     Checking hashbrown v0.9.1
[INFO] [stderr]    Compiling serde_json v1.0.59
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking termcolor v1.1.2
[INFO] [stderr]     Checking bytecount v0.6.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking os_str_bytes v2.4.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling serde_derive v1.0.117
[INFO] [stderr]    Compiling serde v1.0.117
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]    Compiling miniz_oxide v0.4.3
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking textwrap v0.12.1
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking getrandom v0.1.15
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking aho-corasick v0.7.15
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking flate2 v1.0.19
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.1.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking regex v1.4.2
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.2
[INFO] [stderr]     Checking snafu v0.6.9
[INFO] [stderr]     Checking bstr v0.2.14
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking clap v3.0.0-beta.2
[INFO] [stderr]     Checking csv v1.1.4
[INFO] [stderr]     Checking barcodex-rs v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 26s
[INFO] running `Command { std: "docker" "inspect" "a6e584171a4505344a04532e10472a72c2d40c211c4bb3d5210c2de779846563", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a6e584171a4505344a04532e10472a72c2d40c211c4bb3d5210c2de779846563", kill_on_drop: false }`
[INFO] [stdout] a6e584171a4505344a04532e10472a72c2d40c211c4bb3d5210c2de779846563