[INFO] cloning repository https://github.com/clemson-cal/app-binary2d [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-binary2d" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1bd17c29d57dd0035559ad5ae018e13de9007ad4 [INFO] checking clemson-cal/app-binary2d against master#c919f490bbcd2b29b74016101f7ec71aaa24bdbb for pr-79073 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/clemson-cal/app-binary2d on toolchain c919f490bbcd2b29b74016101f7ec71aaa24bdbb [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/clemson-cal/app-binary2d [INFO] finished tweaking git repo https://github.com/clemson-cal/app-binary2d [INFO] tweaked toml for git repo https://github.com/clemson-cal/app-binary2d written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/clemson-cal/app-binary2d already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5b9d5ee14dc93eae7c6dc7594c89036697f01814655b943f52c1a4e12bf9d77a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5b9d5ee14dc93eae7c6dc7594c89036697f01814655b943f52c1a4e12bf9d77a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5b9d5ee14dc93eae7c6dc7594c89036697f01814655b943f52c1a4e12bf9d77a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5b9d5ee14dc93eae7c6dc7594c89036697f01814655b943f52c1a4e12bf9d77a", kill_on_drop: false }` [INFO] [stdout] 5b9d5ee14dc93eae7c6dc7594c89036697f01814655b943f52c1a4e12bf9d77a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+c919f490bbcd2b29b74016101f7ec71aaa24bdbb" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1ffeb9001a6d1d6811da301fe9d315bb5a4b9335324e6b9cd010bfbfee9893ea [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1ffeb9001a6d1d6811da301fe9d315bb5a4b9335324e6b9cd010bfbfee9893ea", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.48 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling proc-macro-nested v0.1.6 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking slab v0.4.2 [INFO] [stderr] Checking once_cell v1.5.2 [INFO] [stderr] Checking futures-core v0.3.8 [INFO] [stderr] Checking futures-sink v0.3.8 [INFO] [stderr] Checking smallvec v1.5.0 [INFO] [stderr] Checking pin-utils v0.1.0 [INFO] [stderr] Checking futures-io v0.3.8 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking pin-project-lite v0.2.0 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking termcolor v1.1.2 [INFO] [stderr] Checking hydro-iso2d v0.1.0 (https://github.com/clemson-cal/hydro-iso2d#3016db4e) [INFO] [stderr] Checking glob v0.3.0 [INFO] [stderr] Checking kepler-two-body v0.1.0 (https://github.com/clemson-cal/kepler-two-body#d42ade30) [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Checking futures-task v0.3.8 [INFO] [stderr] Checking futures-channel v0.3.8 [INFO] [stderr] Checking textwrap v0.12.1 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling num-bigint v0.3.1 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling tokio v0.3.4 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking crossbeam-queue v0.2.3 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking crossbeam v0.7.3 [INFO] [stderr] Checking num-complex v0.3.1 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Checking num v0.3.1 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking godunov-core v0.1.0 (https://github.com/clemson-cal/godunov-core#03c50839) [INFO] [stderr] Checking ndarray-ops v0.1.0 (https://github.com/clemson-cal/ndarray-ops#5c5e6424) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-39ecfd15456369e6/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55c8fd415d60 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55c8fd415d60 - std::backtrace_rs::backtrace::trace_unsynchronized::h2d26397c5720fdbb [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55c8fd415d60 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55c8fd415d60 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55c8fd433d6c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55c8fd412852 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x55c8fd418385 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55c8fd418385 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55c8fd418385 - std::panicking::default_hook::{{closure}}::h5b7294ca19e8edab [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55c8fd417eda - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55c8fd418b21 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55c8fd371f9e - std::panicking::begin_panic::{{closure}}::he3d7732378ff4176 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55c8fd344609 - std::sys_common::backtrace::__rust_end_short_backtrace::h9053ba42664a4087 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55c8fd371ecb - std::panicking::begin_panic::h03ef605202fe0ac2 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55c8fd1f305b - build_script_build::LibrarySearcher::try_locate_hdf5_library::hfb8bdd9ca559e541 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55c8fd1f48c3 - build_script_build::main::h8176117994d32a7f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55c8fd1faf1b - core::ops::function::FnOnce::call_once::hffcb62ada297cf00 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55c8fd20192e - std::sys_common::backtrace::__rust_begin_short_backtrace::hf80dd12d61366d9a [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55c8fd1ff8e1 - std::rt::lang_start::{{closure}}::h02d21eebfc7d9e2e [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55c8fd418f47 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55c8fd418f47 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55c8fd418f47 - std::panicking::try::h068087b173f80a49 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55c8fd418f47 - std::panic::catch_unwind::h1f8259807e825279 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55c8fd418f47 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55c8fd1ff8b7 - std::rt::lang_start::h372eb32326e42f06 [INFO] [stderr] at /rustc/c919f490bbcd2b29b74016101f7ec71aaa24bdbb/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55c8fd1f5f0a - main [INFO] [stderr] 26: 0x7ff22f0ef0b3 - __libc_start_main [INFO] [stderr] 27: 0x55c8fd1ee0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "1ffeb9001a6d1d6811da301fe9d315bb5a4b9335324e6b9cd010bfbfee9893ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1ffeb9001a6d1d6811da301fe9d315bb5a4b9335324e6b9cd010bfbfee9893ea", kill_on_drop: false }` [INFO] [stdout] 1ffeb9001a6d1d6811da301fe9d315bb5a4b9335324e6b9cd010bfbfee9893ea