[INFO] fetching crate netcdf-sys 0.3.3... [INFO] checking netcdf-sys-0.3.3 against try#8b72f65b805cbe4c261de45030d663f524f27376 for pr-78991 [INFO] extracting crate netcdf-sys 0.3.3 into /workspace/builds/worker-11/source [INFO] validating manifest of crates.io crate netcdf-sys 0.3.3 on toolchain 8b72f65b805cbe4c261de45030d663f524f27376 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8b72f65b805cbe4c261de45030d663f524f27376" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-sys 0.3.3 [INFO] finished tweaking crates.io crate netcdf-sys 0.3.3 [INFO] tweaked toml for crates.io crate netcdf-sys 0.3.3 written to /workspace/builds/worker-11/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8b72f65b805cbe4c261de45030d663f524f27376" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8b72f65b805cbe4c261de45030d663f524f27376" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded netcdf-src v0.1.3 [INFO] [stderr] Downloaded hdf5-src v0.7.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+8b72f65b805cbe4c261de45030d663f524f27376" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fa31a3ab442e22f12882534028e53001632cb71973ad4baec8ea5c8914738e49 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "fa31a3ab442e22f12882534028e53001632cb71973ad4baec8ea5c8914738e49", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fa31a3ab442e22f12882534028e53001632cb71973ad4baec8ea5c8914738e49", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fa31a3ab442e22f12882534028e53001632cb71973ad4baec8ea5c8914738e49", kill_on_drop: false }` [INFO] [stdout] fa31a3ab442e22f12882534028e53001632cb71973ad4baec8ea5c8914738e49 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+8b72f65b805cbe4c261de45030d663f524f27376" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 821d1c34f946a558aa156319e5325acafbad3c70aba4265957ba7599406ea5af [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "821d1c34f946a558aa156319e5325acafbad3c70aba4265957ba7599406ea5af", kill_on_drop: false }` [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling cc v1.0.62 [INFO] [stderr] Compiling netcdf-sys v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-39ecfd15456369e6/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55587a4cb610 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55587a4cb610 - std::backtrace_rs::backtrace::trace_unsynchronized::h2d26397c5720fdbb [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55587a4cb610 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55587a4cb610 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55587a4ea4cc - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55587a4c81c2 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/io/mod.rs:1518:15 [INFO] [stderr] 6: 0x55587a4cdad5 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55587a4cdad5 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55587a4cdad5 - std::panicking::default_hook::{{closure}}::h5b7294ca19e8edab [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55587a4cd778 - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55587a4ce271 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x55587a3ba3ee - std::panicking::begin_panic::{{closure}}::he3d7732378ff4176 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/panicking.rs:522:9 [INFO] [stderr] 12: 0x55587a3fb9c9 - std::sys_common::backtrace::__rust_end_short_backtrace::h9053ba42664a4087 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55587a3ba31b - std::panicking::begin_panic::h03ef605202fe0ac2 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/panicking.rs:521:12 [INFO] [stderr] 14: 0x55587a2a306b - build_script_build::LibrarySearcher::try_locate_hdf5_library::hfb8bdd9ca559e541 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55587a2a48d3 - build_script_build::main::h8176117994d32a7f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55587a2ab14b - core::ops::function::FnOnce::call_once::hffcb62ada297cf00 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55587a2b1c3e - std::sys_common::backtrace::__rust_begin_short_backtrace::hf80dd12d61366d9a [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55587a2afbd1 - std::rt::lang_start::{{closure}}::h02d21eebfc7d9e2e [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55587a4ce697 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55587a4ce697 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x55587a4ce697 - std::panicking::try::h068087b173f80a49 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x55587a4ce697 - std::panic::catch_unwind::h1f8259807e825279 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55587a4ce697 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55587a2afba7 - std::rt::lang_start::h372eb32326e42f06 [INFO] [stderr] at /rustc/8b72f65b805cbe4c261de45030d663f524f27376/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55587a2a5f1a - main [INFO] [stderr] 26: 0x7f7f47c350b3 - __libc_start_main [INFO] [stderr] 27: 0x55587a29e0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "821d1c34f946a558aa156319e5325acafbad3c70aba4265957ba7599406ea5af", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "821d1c34f946a558aa156319e5325acafbad3c70aba4265957ba7599406ea5af", kill_on_drop: false }` [INFO] [stdout] 821d1c34f946a558aa156319e5325acafbad3c70aba4265957ba7599406ea5af