[INFO] fetching crate syntaxdot 0.1.0... [INFO] checking syntaxdot-0.1.0 against try#3e22d1f9053c0fc87629b3c6d5d9567856368e5d for pr-78714 [INFO] extracting crate syntaxdot 0.1.0 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate syntaxdot 0.1.0 on toolchain 3e22d1f9053c0fc87629b3c6d5d9567856368e5d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e22d1f9053c0fc87629b3c6d5d9567856368e5d" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate syntaxdot 0.1.0 [INFO] finished tweaking crates.io crate syntaxdot 0.1.0 [INFO] tweaked toml for crates.io crate syntaxdot 0.1.0 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e22d1f9053c0fc87629b3c6d5d9567856368e5d" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e22d1f9053c0fc87629b3c6d5d9567856368e5d" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ndarray-rand v0.11.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+3e22d1f9053c0fc87629b3c6d5d9567856368e5d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9a174010b472540df24a1d6f93eac975a00feaba93778adcae0029a7e7a2eb6f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9a174010b472540df24a1d6f93eac975a00feaba93778adcae0029a7e7a2eb6f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9a174010b472540df24a1d6f93eac975a00feaba93778adcae0029a7e7a2eb6f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9a174010b472540df24a1d6f93eac975a00feaba93778adcae0029a7e7a2eb6f", kill_on_drop: false }` [INFO] [stdout] 9a174010b472540df24a1d6f93eac975a00feaba93778adcae0029a7e7a2eb6f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+3e22d1f9053c0fc87629b3c6d5d9567856368e5d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d1cd886c4252dbf3a7f4717a648e84169a7d3bd646faf29ad32bfd25b9401546 [INFO] running `Command { std: "docker" "start" "-a" "d1cd886c4252dbf3a7f4717a648e84169a7d3bd646faf29ad32bfd25b9401546", kill_on_drop: false }` [INFO] [stderr] Compiling fst v0.4.5 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking seqalign v0.2.2 [INFO] [stderr] Compiling miniz_oxide v0.3.7 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling sentencepiece-sys v0.5.0 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling socket2 v0.3.16 [INFO] [stderr] Checking flate2 v1.0.14 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Compiling openssl-sys v0.9.58 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Compiling backtrace v0.3.54 [INFO] [stderr] Checking ndarray v0.13.1 [INFO] [stderr] Compiling thiserror-impl v1.0.22 [INFO] [stderr] Compiling prost-derive v0.6.1 [INFO] [stderr] Compiling hdf5-derive v0.7.0 [INFO] [stderr] Compiling num-derive v0.3.3 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling curl-sys v0.4.38+curl-7.73.0 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Checking bstr v0.2.14 [INFO] [stderr] Checking numberer v0.2.0 [INFO] [stderr] Checking rand_distr v0.2.2 [INFO] [stderr] Checking edit_tree v0.1.2 [INFO] [stderr] Checking tinytemplate v1.1.0 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Checking csv v1.1.4 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-39ecfd15456369e6/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55aa6e555580 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55aa6e555580 - std::backtrace_rs::backtrace::trace_unsynchronized::h2d26397c5720fdbb [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55aa6e555580 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55aa6e555580 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55aa6e5740bc - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55aa6e552072 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x55aa6e557ba5 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55aa6e557ba5 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55aa6e557ba5 - std::panicking::default_hook::{{closure}}::h5b7294ca19e8edab [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55aa6e5576fa - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55aa6e558341 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55aa6e444b2e - std::panicking::begin_panic::{{closure}}::he3d7732378ff4176 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55aa6e486109 - std::sys_common::backtrace::__rust_end_short_backtrace::h9053ba42664a4087 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55aa6e444a5b - std::panicking::begin_panic::h03ef605202fe0ac2 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55aa6e32e06b - build_script_build::LibrarySearcher::try_locate_hdf5_library::hfb8bdd9ca559e541 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55aa6e32f8d3 - build_script_build::main::h8176117994d32a7f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55aa6e33614b - core::ops::function::FnOnce::call_once::hffcb62ada297cf00 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55aa6e33cc3e - std::sys_common::backtrace::__rust_begin_short_backtrace::hf80dd12d61366d9a [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55aa6e33abd1 - std::rt::lang_start::{{closure}}::h02d21eebfc7d9e2e [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55aa6e558767 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55aa6e558767 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55aa6e558767 - std::panicking::try::h068087b173f80a49 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55aa6e558767 - std::panic::catch_unwind::h1f8259807e825279 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55aa6e558767 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55aa6e33aba7 - std::rt::lang_start::h372eb32326e42f06 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55aa6e330f1a - main [INFO] [stderr] 26: 0x7fb6e7e9e0b3 - __libc_start_main [INFO] [stderr] 27: 0x55aa6e3290be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "d1cd886c4252dbf3a7f4717a648e84169a7d3bd646faf29ad32bfd25b9401546", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d1cd886c4252dbf3a7f4717a648e84169a7d3bd646faf29ad32bfd25b9401546", kill_on_drop: false }` [INFO] [stdout] d1cd886c4252dbf3a7f4717a648e84169a7d3bd646faf29ad32bfd25b9401546