[INFO] cloning repository https://github.com/clemson-cal/app-binary2d [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-binary2d" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 87a91bc3bfdde1978eecb16fdcd004a835b44806 [INFO] checking clemson-cal/app-binary2d against try#3e22d1f9053c0fc87629b3c6d5d9567856368e5d for pr-78714 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d" "/workspace/builds/worker-7/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/clemson-cal/app-binary2d on toolchain 3e22d1f9053c0fc87629b3c6d5d9567856368e5d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e22d1f9053c0fc87629b3c6d5d9567856368e5d" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/clemson-cal/app-binary2d [INFO] finished tweaking git repo https://github.com/clemson-cal/app-binary2d [INFO] tweaked toml for git repo https://github.com/clemson-cal/app-binary2d written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate git repo https://github.com/clemson-cal/app-binary2d already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e22d1f9053c0fc87629b3c6d5d9567856368e5d" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/clemson-cal/hydro-iso2d` [INFO] [stderr] Updating git repository `https://github.com/clemson-cal/kepler-two-body` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+3e22d1f9053c0fc87629b3c6d5d9567856368e5d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d9990da6779b7f390cf62ba328f7c81413b4c3bd5f9aa82dd05bf9d679949520 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d9990da6779b7f390cf62ba328f7c81413b4c3bd5f9aa82dd05bf9d679949520", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d9990da6779b7f390cf62ba328f7c81413b4c3bd5f9aa82dd05bf9d679949520", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d9990da6779b7f390cf62ba328f7c81413b4c3bd5f9aa82dd05bf9d679949520", kill_on_drop: false }` [INFO] [stdout] d9990da6779b7f390cf62ba328f7c81413b4c3bd5f9aa82dd05bf9d679949520 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+3e22d1f9053c0fc87629b3c6d5d9567856368e5d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2dcf3cdad83839d1222c8516036bd4ff4db7eb9143d4b98aecf3b5ca374634a5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2dcf3cdad83839d1222c8516036bd4ff4db7eb9143d4b98aecf3b5ca374634a5", kill_on_drop: false }` [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking os_str_bytes v2.3.2 [INFO] [stderr] Checking hydro-iso2d v0.1.0 (https://github.com/clemson-cal/hydro-iso2d#3efbf6d7) [INFO] [stderr] Checking kepler-two-body v0.1.0 (https://github.com/clemson-cal/kepler-two-body#d42ade30) [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.3.0 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling num-rational v0.3.0 [INFO] [stderr] Compiling num-iter v0.1.41 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking crossbeam-queue v0.2.3 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking crossbeam v0.7.3 [INFO] [stderr] Checking num-complex v0.3.0 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Checking num v0.3.0 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking ndarray-ops v0.1.0 (https://github.com/clemson-cal/ndarray-ops#6e8165ff) [INFO] [stderr] Checking godunov-core v0.1.0 (https://github.com/clemson-cal/godunov-core#49b75883) [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-af63aef5e0dc3944/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x564627172630 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x564627172630 - std::backtrace_rs::backtrace::trace_unsynchronized::h2d26397c5720fdbb [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x564627172630 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x564627172630 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x56462719116c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x56462716f122 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x564627174c55 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x564627174c55 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x564627174c55 - std::panicking::default_hook::{{closure}}::h5b7294ca19e8edab [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5646271747aa - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5646271753f1 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x56462714ed6e - std::panicking::begin_panic::{{closure}}::h3173db7940123010 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x56462714e219 - std::sys_common::backtrace::__rust_end_short_backtrace::h7d311a04a0d33a8c [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x56462714ec9b - std::panicking::begin_panic::hbabaa2f90177f933 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x564626f4806b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h6d81321f1cbe28bf [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x564626f498d3 - build_script_build::main::h8eee34da194032bf [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x564626f4f1bb - core::ops::function::FnOnce::call_once::h562a7efd4f107ef6 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x564626f4d22e - std::sys_common::backtrace::__rust_begin_short_backtrace::h4bfcf0867b08a13a [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x564626f50841 - std::rt::lang_start::{{closure}}::h4cb2aa53717c6526 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x564627175817 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x564627175817 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x564627175817 - std::panicking::try::h068087b173f80a49 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x564627175817 - std::panic::catch_unwind::h1f8259807e825279 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x564627175817 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x564626f50817 - std::rt::lang_start::h0b1cefec69d5755f [INFO] [stderr] at /rustc/3e22d1f9053c0fc87629b3c6d5d9567856368e5d/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x564626f4af1a - main [INFO] [stderr] 26: 0x7f25337c60b3 - __libc_start_main [INFO] [stderr] 27: 0x564626f430be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "2dcf3cdad83839d1222c8516036bd4ff4db7eb9143d4b98aecf3b5ca374634a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2dcf3cdad83839d1222c8516036bd4ff4db7eb9143d4b98aecf3b5ca374634a5", kill_on_drop: false }` [INFO] [stdout] 2dcf3cdad83839d1222c8516036bd4ff4db7eb9143d4b98aecf3b5ca374634a5