[INFO] fetching crate syntaxdot-transformers 0.1.0... [INFO] checking syntaxdot-transformers-0.1.0 against beta for pr-78714 [INFO] extracting crate syntaxdot-transformers 0.1.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate syntaxdot-transformers 0.1.0 on toolchain beta [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate syntaxdot-transformers 0.1.0 [INFO] finished tweaking crates.io crate syntaxdot-transformers 0.1.0 [INFO] tweaked toml for crates.io crate syntaxdot-transformers 0.1.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 914592f3b148c601a0163af26f9d2d2dbaccc252bc0afff4f36e2e527c89d13f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "914592f3b148c601a0163af26f9d2d2dbaccc252bc0afff4f36e2e527c89d13f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "914592f3b148c601a0163af26f9d2d2dbaccc252bc0afff4f36e2e527c89d13f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "914592f3b148c601a0163af26f9d2d2dbaccc252bc0afff4f36e2e527c89d13f", kill_on_drop: false }` [INFO] [stdout] 914592f3b148c601a0163af26f9d2d2dbaccc252bc0afff4f36e2e527c89d13f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8db6d4a62303773a972d530986ef5cbd11e9dd3cfb77466e7fabc5a4eff3a0f5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8db6d4a62303773a972d530986ef5cbd11e9dd3cfb77466e7fabc5a4eff3a0f5", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling curl-sys v0.4.38+curl-7.73.0 [INFO] [stderr] Compiling hdf5-derive v0.7.0 [INFO] [stderr] Compiling thiserror v1.0.22 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Checking flate2 v1.0.14 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5064134ce314b5db/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5589224dec70 - std::backtrace_rs::backtrace::libunwind::trace::h7cf3ca97bd83fbab [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x5589224dec70 - std::backtrace_rs::backtrace::trace_unsynchronized::h5a69c674b2d9ea5c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5589224dec70 - std::sys_common::backtrace::_print_fmt::hdf72478dfcb50678 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x5589224dec70 - ::fmt::h1e0bdbb35e83deca [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x5589224fcddc - core::fmt::write::he67f9b17bcb7ee73 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x5589224db842 - std::io::Write::write_fmt::hac97d5cb5753e2ec [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/io/mod.rs:1516 [INFO] [stderr] 6: 0x5589224e0f7d - std::sys_common::backtrace::_print::haa20918e28a126c5 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x5589224e0f7d - std::sys_common::backtrace::print::h49e772a4873d9076 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x5589224e0f7d - std::panicking::default_hook::{{closure}}::hb218b305d15e3f11 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x5589224e0c28 - std::panicking::default_hook::h63997b7b949e1ce0 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x5589224e1661 - std::panicking::rust_panic_with_hook::hb54f09ccadf64bd3 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x5589222decbc - std::panicking::begin_panic::{{closure}}::h09370bc4c066cbdf [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x5589222cec79 - std::sys_common::backtrace::__rust_end_short_backtrace::hdcec2fcc0f79b2a3 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x5589222debe7 - std::panicking::begin_panic::h74a90b6fdf6aa66c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x5589222b420c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h7c7d52c196d739a3 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x5589222b5ad1 - build_script_build::main::h8e7516f6d8ae2cbb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x5589222bc3bb - core::ops::function::FnOnce::call_once::hc90c4d6b41101c21 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x5589222c343e - std::sys_common::backtrace::__rust_begin_short_backtrace::h607e56706b85769c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x5589222c11d1 - std::rt::lang_start::{{closure}}::hc46d8e5c3f942485 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x5589224e1a87 - core::ops::function::impls:: for &F>::call_once::h908982dfc31b926f [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x5589224e1a87 - std::panicking::try::do_call::h92777899503b7584 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:381 [INFO] [stderr] 21: 0x5589224e1a87 - std::panicking::try::h8815656b2b76e792 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:345 [INFO] [stderr] 22: 0x5589224e1a87 - std::panic::catch_unwind::h112ab81228f50b46 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panic.rs:382 [INFO] [stderr] 23: 0x5589224e1a87 - std::rt::lang_start_internal::h1772a706c7575c24 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x5589222c11a7 - std::rt::lang_start::hc22397a14297b174 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x5589222b714a - main [INFO] [stderr] 26: 0x7fe64d6cc0b3 - __libc_start_main [INFO] [stderr] 27: 0x5589222af0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "8db6d4a62303773a972d530986ef5cbd11e9dd3cfb77466e7fabc5a4eff3a0f5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8db6d4a62303773a972d530986ef5cbd11e9dd3cfb77466e7fabc5a4eff3a0f5", kill_on_drop: false }` [INFO] [stdout] 8db6d4a62303773a972d530986ef5cbd11e9dd3cfb77466e7fabc5a4eff3a0f5