[INFO] fetching crate smafa 0.5.0...
[INFO] checking smafa-0.5.0 against beta for pr-78714
[INFO] extracting crate smafa 0.5.0 into /workspace/builds/worker-13/source
[INFO] validating manifest of crates.io crate smafa 0.5.0 on toolchain beta
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate smafa 0.5.0
[INFO] finished tweaking crates.io crate smafa 0.5.0
[INFO] tweaked toml for crates.io crate smafa 0.5.0 written to /workspace/builds/worker-13/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a5777160a78722ed923cd4c2b34776355b15f09eb0ed6d73732e931049f98814
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "a5777160a78722ed923cd4c2b34776355b15f09eb0ed6d73732e931049f98814", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a5777160a78722ed923cd4c2b34776355b15f09eb0ed6d73732e931049f98814", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a5777160a78722ed923cd4c2b34776355b15f09eb0ed6d73732e931049f98814", kill_on_drop: false }`
[INFO] [stdout] a5777160a78722ed923cd4c2b34776355b15f09eb0ed6d73732e931049f98814
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 66ccf40288472ba710f1eeaa956d238e4616e13236ffa06188854d0181512f22
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "66ccf40288472ba710f1eeaa956d238e4616e13236ffa06188854d0181512f22", kill_on_drop: false }`
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling bio v0.26.1
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]     Checking strum v0.13.0
[INFO] [stderr]     Checking environment v0.1.1
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling bincode v1.1.4
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.1.0
[INFO] [stderr]     Checking snap v0.2.5
[INFO] [stderr]     Checking statrs v0.9.0
[INFO] [stderr]    Compiling strum_macros v0.13.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bstr v0.2.14
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking assert_cli v0.6.3
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking csv v1.1.4
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking smafa v0.5.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/fragment_clusterer.rs:13:47
[INFO] [stdout]    |
[INFO] [stdout] 13 | ...                   print_stream: &mut std::io::Write){
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/lib.rs:168:33
[INFO] [stdout]     |
[INFO] [stdout] 168 |              print_stream: &mut std::io::Write, k: usize,
[INFO] [stdout]     |                                 ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/lib.rs:306:24
[INFO] [stdout]     |
[INFO] [stdout] 306 |     print_stream: &mut std::io::Write,
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/lib.rs:447:24
[INFO] [stdout]     |
[INFO] [stdout] 447 |     print_stream: &mut std::io::Write) {
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/fragment_clusterer.rs:13:47
[INFO] [stdout]    |
[INFO] [stdout] 13 | ...                   print_stream: &mut std::io::Write){
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/lib.rs:168:33
[INFO] [stdout]     |
[INFO] [stdout] 168 |              print_stream: &mut std::io::Write, k: usize,
[INFO] [stdout]     |                                 ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/lib.rs:306:24
[INFO] [stdout]     |
[INFO] [stdout] 306 |     print_stream: &mut std::io::Write,
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/lib.rs:447:24
[INFO] [stdout]     |
[INFO] [stdout] 447 |     print_stream: &mut std::io::Write) {
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 18.17s
[INFO] running `Command { std: "docker" "inspect" "66ccf40288472ba710f1eeaa956d238e4616e13236ffa06188854d0181512f22", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "66ccf40288472ba710f1eeaa956d238e4616e13236ffa06188854d0181512f22", kill_on_drop: false }`
[INFO] [stdout] 66ccf40288472ba710f1eeaa956d238e4616e13236ffa06188854d0181512f22