[INFO] fetching crate hnsw_rs 0.1.7... [INFO] checking hnsw_rs-0.1.7 against beta for pr-78714 [INFO] extracting crate hnsw_rs 0.1.7 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate hnsw_rs 0.1.7 on toolchain beta [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hnsw_rs 0.1.7 [INFO] finished tweaking crates.io crate hnsw_rs 0.1.7 [INFO] tweaked toml for crates.io crate hnsw_rs 0.1.7 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate hnsw_rs 0.1.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 83332dfddaccadf88bf3a515319b7927200dbebfa3cbe71d79bc93a1943304d2 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "83332dfddaccadf88bf3a515319b7927200dbebfa3cbe71d79bc93a1943304d2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "83332dfddaccadf88bf3a515319b7927200dbebfa3cbe71d79bc93a1943304d2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "83332dfddaccadf88bf3a515319b7927200dbebfa3cbe71d79bc93a1943304d2", kill_on_drop: false }` [INFO] [stdout] 83332dfddaccadf88bf3a515319b7927200dbebfa3cbe71d79bc93a1943304d2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 004f6f0295e1dfb28eeb1dd5dc5e20ee035f9643c94fb9c3c3c4ce2b0ce2ba51 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "004f6f0295e1dfb28eeb1dd5dc5e20ee035f9643c94fb9c3c3c4ce2b0ce2ba51", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.36 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling rayon-core v1.7.1 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking instant v0.1.6 [INFO] [stderr] Compiling serde_derive v1.0.114 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking ahash v0.4.4 [INFO] [stderr] Compiling time v0.2.17 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking serde v1.0.114 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.0 [INFO] [stderr] Checking cpu-time v1.0.0 [INFO] [stderr] Checking hashbrown v0.9.0 [INFO] [stderr] Checking clap v2.33.1 [INFO] [stderr] Checking crossbeam-queue v0.2.3 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking crossbeam-epoch v0.8.2 [INFO] [stderr] Checking parking_lot v0.11.0 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking simdeez v1.0.6 [INFO] [stderr] Checking rayon v0.9.0 [INFO] [stderr] Checking skiplist v0.3.0 [INFO] [stderr] Checking ndarray v0.13.1 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-8a1a691078658619/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55f2e7abecf0 - std::backtrace_rs::backtrace::libunwind::trace::h7cf3ca97bd83fbab [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x55f2e7abecf0 - std::backtrace_rs::backtrace::trace_unsynchronized::h5a69c674b2d9ea5c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55f2e7abecf0 - std::sys_common::backtrace::_print_fmt::hdf72478dfcb50678 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x55f2e7abecf0 - ::fmt::h1e0bdbb35e83deca [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x55f2e7adce5c - core::fmt::write::he67f9b17bcb7ee73 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x55f2e7abb8c2 - std::io::Write::write_fmt::hac97d5cb5753e2ec [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/io/mod.rs:1516 [INFO] [stderr] 6: 0x55f2e7ac0ffd - std::sys_common::backtrace::_print::haa20918e28a126c5 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x55f2e7ac0ffd - std::sys_common::backtrace::print::h49e772a4873d9076 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x55f2e7ac0ffd - std::panicking::default_hook::{{closure}}::hb218b305d15e3f11 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x55f2e7ac0ca8 - std::panicking::default_hook::h63997b7b949e1ce0 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x55f2e7ac16e1 - std::panicking::rust_panic_with_hook::hb54f09ccadf64bd3 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x55f2e78bdf3c - std::panicking::begin_panic::{{closure}}::h035a921a567d5320 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x55f2e78c6c79 - std::sys_common::backtrace::__rust_end_short_backtrace::h92abcf0bdccd7aa8 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x55f2e78bde67 - std::panicking::begin_panic::h75e42cf1720ec2be [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x55f2e789120c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h171cc28cf4195560 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x55f2e7892ad1 - build_script_build::main::h04e15e35ac19c89c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x55f2e7898c2b - core::ops::function::FnOnce::call_once::h8794bb5e2be245a7 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x55f2e789f84e - std::sys_common::backtrace::__rust_begin_short_backtrace::hc7cbc91fcbaee440 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x55f2e789e4c1 - std::rt::lang_start::{{closure}}::h96b6492a80d1f703 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x55f2e7ac1b07 - core::ops::function::impls:: for &F>::call_once::h908982dfc31b926f [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x55f2e7ac1b07 - std::panicking::try::do_call::h92777899503b7584 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:381 [INFO] [stderr] 21: 0x55f2e7ac1b07 - std::panicking::try::h8815656b2b76e792 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:345 [INFO] [stderr] 22: 0x55f2e7ac1b07 - std::panic::catch_unwind::h112ab81228f50b46 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panic.rs:382 [INFO] [stderr] 23: 0x55f2e7ac1b07 - std::rt::lang_start_internal::h1772a706c7575c24 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x55f2e789e497 - std::rt::lang_start::he1d5af3bb80a3d4c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x55f2e789414a - main [INFO] [stderr] 26: 0x7f36db5960b3 - __libc_start_main [INFO] [stderr] 27: 0x55f2e788c0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "004f6f0295e1dfb28eeb1dd5dc5e20ee035f9643c94fb9c3c3c4ce2b0ce2ba51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "004f6f0295e1dfb28eeb1dd5dc5e20ee035f9643c94fb9c3c3c4ce2b0ce2ba51", kill_on_drop: false }` [INFO] [stdout] 004f6f0295e1dfb28eeb1dd5dc5e20ee035f9643c94fb9c3c3c4ce2b0ce2ba51