[INFO] fetching crate gb-io 0.6.0... [INFO] checking gb-io-0.6.0 against beta for pr-78714 [INFO] extracting crate gb-io 0.6.0 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate gb-io 0.6.0 on toolchain beta [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate gb-io 0.6.0 [INFO] finished tweaking crates.io crate gb-io 0.6.0 [INFO] tweaked toml for crates.io crate gb-io 0.6.0 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate gb-io 0.6.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 82fd7ed21bd5723f0c28707195a8cd6c5d5168b76ea2c0719d28473e6f98547a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "82fd7ed21bd5723f0c28707195a8cd6c5d5168b76ea2c0719d28473e6f98547a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "82fd7ed21bd5723f0c28707195a8cd6c5d5168b76ea2c0719d28473e6f98547a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "82fd7ed21bd5723f0c28707195a8cd6c5d5168b76ea2c0719d28473e6f98547a", kill_on_drop: false }` [INFO] [stdout] 82fd7ed21bd5723f0c28707195a8cd6c5d5168b76ea2c0719d28473e6f98547a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7eb17f1b88ec60aef9f1b04083d3efd84e677c9f332240b7d27cae06df5543cd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7eb17f1b88ec60aef9f1b04083d3efd84e677c9f332240b7d27cae06df5543cd", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling rustversion v1.0.2 [INFO] [stderr] Compiling doc-comment v0.3.2 [INFO] [stderr] Checking regex-syntax v0.6.16 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Compiling bio v0.30.0 [INFO] [stderr] Checking strum v0.16.0 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking circular v0.3.0 [INFO] [stderr] Checking bencher v0.1.5 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling backtrace-sys v0.1.33 [INFO] [stderr] Compiling proc-macro-error-attr v0.4.11 [INFO] [stderr] Compiling proc-macro-error v0.4.11 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking bit-set v0.5.1 [INFO] [stderr] Checking nom v4.2.3 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Compiling bv v0.11.0 [INFO] [stderr] Checking statrs v0.11.0 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Checking backtrace v0.3.45 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Compiling phf_generator v0.8.0 [INFO] [stderr] Compiling string_cache_codegen v0.5.1 [INFO] [stderr] Checking snafu v0.5.0 [INFO] [stderr] Compiling gb-io v0.6.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] Compiling synstructure v0.12.3 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling strum_macros v0.16.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling err-derive v0.2.3 [INFO] [stderr] Checking serde v1.0.104 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] Checking multimap v0.6.0 [INFO] [stderr] Checking serde_bytes v0.11.3 [INFO] [stderr] Checking string_cache v0.8.0 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stdout] error: couldn't read src/../tests/mg1655.gb: No such file or directory (os error 2) [INFO] [stdout] --> src/lib.rs:72:21 [INFO] [stdout] | [INFO] [stdout] 72 | let ecoli = include_bytes!("../tests/mg1655.gb"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stdout] --> src/lib.rs:88:32 [INFO] [stdout] | [INFO] [stdout] 88 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stdout] --> src/lib.rs:95:32 [INFO] [stdout] | [INFO] [stdout] 95 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap().pop().unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read src/../tests/biopython_tests/ls_orchid.gb: No such file or directory (os error 2) [INFO] [stdout] --> src/lib.rs:114:25 [INFO] [stdout] | [INFO] [stdout] 114 | parse_slice(include_bytes!("../tests/biopython_tests/ls_orchid.gb")).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 4 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gb-io` [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "7eb17f1b88ec60aef9f1b04083d3efd84e677c9f332240b7d27cae06df5543cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7eb17f1b88ec60aef9f1b04083d3efd84e677c9f332240b7d27cae06df5543cd", kill_on_drop: false }` [INFO] [stdout] 7eb17f1b88ec60aef9f1b04083d3efd84e677c9f332240b7d27cae06df5543cd