[INFO] fetching crate cartograph 0.1.2... [INFO] checking cartograph-0.1.2 against beta for pr-78714 [INFO] extracting crate cartograph 0.1.2 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate cartograph 0.1.2 on toolchain beta [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate cartograph 0.1.2 [INFO] finished tweaking crates.io crate cartograph 0.1.2 [INFO] tweaked toml for crates.io crate cartograph 0.1.2 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate cartograph 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5404d13b377f02f63d9789723aab0f94c0115b4a1e2cef43c07a81046e9d136c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5404d13b377f02f63d9789723aab0f94c0115b4a1e2cef43c07a81046e9d136c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5404d13b377f02f63d9789723aab0f94c0115b4a1e2cef43c07a81046e9d136c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5404d13b377f02f63d9789723aab0f94c0115b4a1e2cef43c07a81046e9d136c", kill_on_drop: false }` [INFO] [stdout] 5404d13b377f02f63d9789723aab0f94c0115b4a1e2cef43c07a81046e9d136c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3aad7b1ea8e76ea5f804c31828379c5e4682e03e21e33477bfdcce287456ce71 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3aad7b1ea8e76ea5f804c31828379c5e4682e03e21e33477bfdcce287456ce71", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling siphasher v0.3.3 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking regex-syntax v0.6.21 [INFO] [stderr] Compiling netcdf-sys v0.3.3 [INFO] [stderr] Checking bytemuck v1.4.1 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking ucd-trie v0.1.3 [INFO] [stderr] Compiling paste v1.0.2 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking slice-of-array v0.2.1 [INFO] [stderr] Checking hex v0.4.2 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking rgb v0.8.25 [INFO] [stderr] Checking pest v2.1.3 [INFO] [stderr] Checking libm v0.2.1 [INFO] [stderr] Checking libc v0.2.80 [INFO] [stderr] Checking memchr v2.3.4 [INFO] [stderr] Compiling phf_shared v0.8.0 [INFO] [stderr] Checking typenum v1.12.0 [INFO] [stderr] Checking ryu v1.0.5 [INFO] [stderr] Checking matrixmultiply v0.1.15 [INFO] [stderr] Checking bitflags v1.2.1 [INFO] [stderr] Checking memoffset v0.5.6 [INFO] [stderr] Checking crossbeam-utils v0.8.0 [INFO] [stderr] Checking ansi_rgb v0.2.0 [INFO] [stderr] Checking indexmap v1.6.0 [INFO] [stderr] Compiling pest_generator v2.1.3 [INFO] [stderr] Compiling palette_derive v0.5.0 [INFO] [stderr] Compiling arctk-proc v0.2.0 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking serde v1.0.117 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking phf v0.8.0 [INFO] [stderr] Checking crossbeam-epoch v0.9.0 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Checking num-traits v0.2.14 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking getrandom v0.1.15 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking libz-sys v1.1.2 [INFO] [stderr] Checking terminal_size v0.1.13 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking generic-array v0.14.4 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rayon-core v1.9.0 [INFO] [stderr] Checking colored v2.0.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rayon v1.5.0 [INFO] [stderr] Compiling pest_derive v2.1.0 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5064134ce314b5db/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ae874c4c70 - std::backtrace_rs::backtrace::libunwind::trace::h7cf3ca97bd83fbab [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x55ae874c4c70 - std::backtrace_rs::backtrace::trace_unsynchronized::h5a69c674b2d9ea5c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55ae874c4c70 - std::sys_common::backtrace::_print_fmt::hdf72478dfcb50678 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x55ae874c4c70 - ::fmt::h1e0bdbb35e83deca [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x55ae874e2ddc - core::fmt::write::he67f9b17bcb7ee73 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x55ae874c1842 - std::io::Write::write_fmt::hac97d5cb5753e2ec [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/io/mod.rs:1516 [INFO] [stderr] 6: 0x55ae874c6f7d - std::sys_common::backtrace::_print::haa20918e28a126c5 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x55ae874c6f7d - std::sys_common::backtrace::print::h49e772a4873d9076 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x55ae874c6f7d - std::panicking::default_hook::{{closure}}::hb218b305d15e3f11 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x55ae874c6c28 - std::panicking::default_hook::h63997b7b949e1ce0 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x55ae874c7661 - std::panicking::rust_panic_with_hook::hb54f09ccadf64bd3 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x55ae872c4cbc - std::panicking::begin_panic::{{closure}}::h09370bc4c066cbdf [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x55ae872b4c79 - std::sys_common::backtrace::__rust_end_short_backtrace::hdcec2fcc0f79b2a3 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x55ae872c4be7 - std::panicking::begin_panic::h74a90b6fdf6aa66c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x55ae8729a20c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h7c7d52c196d739a3 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x55ae8729bad1 - build_script_build::main::h8e7516f6d8ae2cbb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x55ae872a23bb - core::ops::function::FnOnce::call_once::hc90c4d6b41101c21 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x55ae872a943e - std::sys_common::backtrace::__rust_begin_short_backtrace::h607e56706b85769c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x55ae872a71d1 - std::rt::lang_start::{{closure}}::hc46d8e5c3f942485 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x55ae874c7a87 - core::ops::function::impls:: for &F>::call_once::h908982dfc31b926f [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x55ae874c7a87 - std::panicking::try::do_call::h92777899503b7584 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:381 [INFO] [stderr] 21: 0x55ae874c7a87 - std::panicking::try::h8815656b2b76e792 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:345 [INFO] [stderr] 22: 0x55ae874c7a87 - std::panic::catch_unwind::h112ab81228f50b46 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panic.rs:382 [INFO] [stderr] 23: 0x55ae874c7a87 - std::rt::lang_start_internal::h1772a706c7575c24 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x55ae872a71a7 - std::rt::lang_start::hc22397a14297b174 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x55ae8729d14a - main [INFO] [stderr] 26: 0x7fd603f100b3 - __libc_start_main [INFO] [stderr] 27: 0x55ae872950be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "3aad7b1ea8e76ea5f804c31828379c5e4682e03e21e33477bfdcce287456ce71", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3aad7b1ea8e76ea5f804c31828379c5e4682e03e21e33477bfdcce287456ce71", kill_on_drop: false }` [INFO] [stdout] 3aad7b1ea8e76ea5f804c31828379c5e4682e03e21e33477bfdcce287456ce71