[INFO] cloning repository https://github.com/yitapi/analyze_amplicons [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/yitapi/analyze_amplicons" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] be4f0e4f49256237f3026919a2742eb16e73dd75 [INFO] checking yitapi/analyze_amplicons against beta for pr-78714 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/yitapi/analyze_amplicons on toolchain beta [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/yitapi/analyze_amplicons [INFO] finished tweaking git repo https://github.com/yitapi/analyze_amplicons [INFO] tweaked toml for git repo https://github.com/yitapi/analyze_amplicons written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/yitapi/analyze_amplicons already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ordered-float v0.3.0 [INFO] [stderr] Downloaded nalgebra v0.10.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7fa80ecef9c17a077ce2bf8bb4de94c44684bdef7a394d197b8ea763ad5e47ca [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7fa80ecef9c17a077ce2bf8bb4de94c44684bdef7a394d197b8ea763ad5e47ca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7fa80ecef9c17a077ce2bf8bb4de94c44684bdef7a394d197b8ea763ad5e47ca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7fa80ecef9c17a077ce2bf8bb4de94c44684bdef7a394d197b8ea763ad5e47ca", kill_on_drop: false }` [INFO] [stdout] 7fa80ecef9c17a077ce2bf8bb4de94c44684bdef7a394d197b8ea763ad5e47ca [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] e144340b6048901e4aa725fa441820e20df599a910b1d3cdf8a704200ebe9b51 [INFO] running `Command { std: "docker" "start" "-a" "e144340b6048901e4aa725fa441820e20df599a910b1d3cdf8a704200ebe9b51", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Checking libc v0.2.20 [INFO] [stderr] Checking either v1.0.2 [INFO] [stderr] Checking bit-vec v0.4.3 [INFO] [stderr] Checking byteorder v1.0.0 [INFO] [stderr] Checking quick-error v1.1.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking vec_map v0.6.0 [INFO] [stderr] Checking itertools-num v0.1.1 [INFO] [stderr] Checking ordered-float v0.3.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking itertools v0.5.9 [INFO] [stderr] Checking bit-set v0.4.0 [INFO] [stderr] Checking rand v0.3.15 [INFO] [stderr] Checking memchr v1.0.1 [INFO] [stderr] Checking csv v0.15.0 [INFO] [stderr] Checking num-bigint v0.1.35 [INFO] [stderr] Checking num-rational v0.1.35 [INFO] [stderr] Checking num v0.1.36 [INFO] [stderr] Checking nalgebra v0.10.1 [INFO] [stderr] Checking bio v0.10.0 (https://github.com/yitapi/rust-bio#24e457b1) [INFO] [stderr] Checking analyze_amplicon v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:92:22 [INFO] [stdout] | [INFO] [stdout] 92 | let mut output = try!(File::create(output_file)); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:137:9 [INFO] [stdout] | [INFO] [stdout] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:86:101 [INFO] [stdout] | [INFO] [stdout] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:92:22 [INFO] [stdout] | [INFO] [stdout] 92 | let mut output = try!(File::create(output_file)); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:137:9 [INFO] [stdout] | [INFO] [stdout] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:86:101 [INFO] [stdout] | [INFO] [stdout] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:350:5 [INFO] [stdout] | [INFO] [stdout] 350 | data_stat(&results, &args[4]); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:350:5 [INFO] [stdout] | [INFO] [stdout] 350 | data_stat(&results, &args[4]); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 19.37s [INFO] running `Command { std: "docker" "inspect" "e144340b6048901e4aa725fa441820e20df599a910b1d3cdf8a704200ebe9b51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e144340b6048901e4aa725fa441820e20df599a910b1d3cdf8a704200ebe9b51", kill_on_drop: false }` [INFO] [stdout] e144340b6048901e4aa725fa441820e20df599a910b1d3cdf8a704200ebe9b51