[INFO] cloning repository https://github.com/sveint/bamstats [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sveint/bamstats" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsveint%2Fbamstats", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsveint%2Fbamstats'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 7e79d502a15c6fabeeeb0ef2974803da91562565 [INFO] checking sveint/bamstats against beta for pr-78714 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsveint%2Fbamstats" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/sveint/bamstats on toolchain beta [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/sveint/bamstats [INFO] finished tweaking git repo https://github.com/sveint/bamstats [INFO] tweaked toml for git repo https://github.com/sveint/bamstats written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/sveint/bamstats already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] error: the lock file /workspace/builds/worker-9/source/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag. [INFO] the lockfile is outdated, regenerating it [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] e88203dbdc8c7a36d2e069c391712b27f68d18e79844589a5874d47767ecef71 [INFO] running `Command { std: "docker" "start" "-a" "e88203dbdc8c7a36d2e069c391712b27f68d18e79844589a5874d47767ecef71", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e88203dbdc8c7a36d2e069c391712b27f68d18e79844589a5874d47767ecef71", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e88203dbdc8c7a36d2e069c391712b27f68d18e79844589a5874d47767ecef71", kill_on_drop: false }` [INFO] [stdout] e88203dbdc8c7a36d2e069c391712b27f68d18e79844589a5874d47767ecef71 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 17a22a0ba5d9f85fd2ca822b2f0a5d47e9599dfdef66036dbb99c8100a7462ba [INFO] running `Command { std: "docker" "start" "-a" "17a22a0ba5d9f85fd2ca822b2f0a5d47e9599dfdef66036dbb99c8100a7462ba", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.48 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Compiling rust-htslib v0.5.2 [INFO] [stderr] Checking bit-vec v0.6.2 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking getrandom v0.1.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.1.0 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling snafu-derive v0.6.9 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking snafu v0.6.9 [INFO] [stderr] Checking serde v1.0.117 [INFO] [stderr] Checking bstr v0.2.14 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bio-types v0.7.0 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking csv v1.1.4 [INFO] [stderr] Checking bamstats v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::io` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::io; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::fasta` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use bio::io::fasta; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::io; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `base` [INFO] [stdout] --> src/main.rs:80:14 [INFO] [stdout] | [INFO] [stdout] 80 | for (base, &number) in alignment_counter.iter() { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_base` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::fasta` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use bio::io::fasta; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `FASTA_SEQS` [INFO] [stdout] --> src/main.rs:13:1 [INFO] [stdout] | [INFO] [stdout] 13 | / const FASTA_SEQS: &'static [ &'static str ] = &[ [INFO] [stdout] 14 | | "1 dna:chromosome chromosome:GRCh37:1:1:249250621:1", [INFO] [stdout] 15 | | "2 dna:chromosome chromosome:GRCh37:2:1:243199373:1", [INFO] [stdout] 16 | | "3 dna:chromosome chromosome:GRCh37:3:1:198022430:1", [INFO] [stdout] ... | [INFO] [stdout] 37 | | "Y dna:chromosome chromosome:GRCh37:Y:2649521:59034049:1" [INFO] [stdout] 38 | | ]; [INFO] [stdout] | |__^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `base` [INFO] [stdout] --> src/main.rs:80:14 [INFO] [stdout] | [INFO] [stdout] 80 | for (base, &number) in alignment_counter.iter() { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_base` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `FASTA_SEQS` [INFO] [stdout] --> src/main.rs:13:1 [INFO] [stdout] | [INFO] [stdout] 13 | / const FASTA_SEQS: &'static [ &'static str ] = &[ [INFO] [stdout] 14 | | "1 dna:chromosome chromosome:GRCh37:1:1:249250621:1", [INFO] [stdout] 15 | | "2 dna:chromosome chromosome:GRCh37:2:1:243199373:1", [INFO] [stdout] 16 | | "3 dna:chromosome chromosome:GRCh37:3:1:198022430:1", [INFO] [stdout] ... | [INFO] [stdout] 37 | | "Y dna:chromosome chromosome:GRCh37:Y:2649521:59034049:1" [INFO] [stdout] 38 | | ]; [INFO] [stdout] | |__^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 12s [INFO] running `Command { std: "docker" "inspect" "17a22a0ba5d9f85fd2ca822b2f0a5d47e9599dfdef66036dbb99c8100a7462ba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "17a22a0ba5d9f85fd2ca822b2f0a5d47e9599dfdef66036dbb99c8100a7462ba", kill_on_drop: false }` [INFO] [stdout] 17a22a0ba5d9f85fd2ca822b2f0a5d47e9599dfdef66036dbb99c8100a7462ba