[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f3273e476fe4ec0c5e74886ff10f6ca81ccd1266
[INFO] checking informationsea/sequencetoolkit against beta for pr-78714
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-4/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain beta
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-4/source/Cargo.toml
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8cb10bf560d8cce4fe78bf75c70c469f02b7387c9f16f5c773334bf93e2da1a3
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "8cb10bf560d8cce4fe78bf75c70c469f02b7387c9f16f5c773334bf93e2da1a3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8cb10bf560d8cce4fe78bf75c70c469f02b7387c9f16f5c773334bf93e2da1a3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8cb10bf560d8cce4fe78bf75c70c469f02b7387c9f16f5c773334bf93e2da1a3", kill_on_drop: false }`
[INFO] [stdout] 8cb10bf560d8cce4fe78bf75c70c469f02b7387c9f16f5c773334bf93e2da1a3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 784351190f86e6f351ee6324169cb0b531edd0723ae0a2ef4ab7f7cd5d31c132
[INFO] running `Command { std: "docker" "start" "-a" "784351190f86e6f351ee6324169cb0b531edd0723ae0a2ef4ab7f7cd5d31c132", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.77
[INFO] [stderr]    Compiling proc-macro2 v1.0.21
[INFO] [stderr]    Compiling syn v1.0.41
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling lexical-core v0.7.4
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling arrayvec v0.5.1
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling bindgen v0.53.3
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking alloc-no-stdlib v2.0.1
[INFO] [stderr]    Compiling snap v1.0.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking bit-vec v0.6.2
[INFO] [stderr]    Compiling bio v0.30.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling miniz_oxide v0.4.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]     Checking alloc-stdlib v0.2.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking brotli-decompressor v2.3.1
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]    Compiling clang-sys v0.29.3
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking getrandom v0.1.15
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]     Checking env_logger v0.7.1
[INFO] [stderr]    Compiling cc v1.0.60
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking backtrace v0.3.50
[INFO] [stderr]     Checking flate2 v1.0.17
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking pretty_env_logger v0.4.0
[INFO] [stderr]     Checking brotli v3.3.0
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.1.0
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling zstd-sys v1.4.17+zstd.1.4.5
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling lz4-sys v1.9.2
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]     Checking xz2 v0.1.6
[INFO] [stderr]     Checking bzip2 v0.3.3
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]     Checking lz4 v1.23.2
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]     Checking vcf v0.4.0
[INFO] [stderr]     Checking bgzip v0.1.0
[INFO] [stderr]     Checking snafu v0.6.8
[INFO] [stderr]     Checking serde v1.0.116
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking bincode v1.3.1
[INFO] [stderr]     Checking bio-types v0.6.0
[INFO] [stderr]     Checking serde_json v1.0.57
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking zstd-safe v2.0.5+zstd.1.4.5
[INFO] [stderr]     Checking zstd v0.5.3+zstd.1.4.5
[INFO] [stderr]     Checking autocompress v0.1.0
[INFO] [stderr]    Compiling libxlsxwriter-sys v0.9.4
[INFO] [stderr]     Checking xlsxwriter v0.3.1
[INFO] [stderr]     Checking sequencetoolkit v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 51s
[INFO] running `Command { std: "docker" "inspect" "784351190f86e6f351ee6324169cb0b531edd0723ae0a2ef4ab7f7cd5d31c132", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "784351190f86e6f351ee6324169cb0b531edd0723ae0a2ef4ab7f7cd5d31c132", kill_on_drop: false }`
[INFO] [stdout] 784351190f86e6f351ee6324169cb0b531edd0723ae0a2ef4ab7f7cd5d31c132