[INFO] cloning repository https://github.com/clemson-cal/app-jet2d
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-jet2d" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-jet2d", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-jet2d'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 44f7d97e54ff4cb81b5763ed133c7dde1aab4c83
[INFO] checking clemson-cal/app-jet2d against beta for pr-78714
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-jet2d" "/workspace/builds/worker-1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/clemson-cal/app-jet2d on toolchain beta
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/clemson-cal/app-jet2d
[INFO] finished tweaking git repo https://github.com/clemson-cal/app-jet2d
[INFO] tweaked toml for git repo https://github.com/clemson-cal/app-jet2d written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate git repo https://github.com/clemson-cal/app-jet2d already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 65202ded86e13ec219fe8c57549457012b2e9d0edc1211388d879a2fad0c0975
[INFO] running `Command { std: "docker" "start" "-a" "65202ded86e13ec219fe8c57549457012b2e9d0edc1211388d879a2fad0c0975", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "65202ded86e13ec219fe8c57549457012b2e9d0edc1211388d879a2fad0c0975", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "65202ded86e13ec219fe8c57549457012b2e9d0edc1211388d879a2fad0c0975", kill_on_drop: false }`
[INFO] [stdout] 65202ded86e13ec219fe8c57549457012b2e9d0edc1211388d879a2fad0c0975
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] b20e97fd72a0d0c3bf70491c5d0550ed701fd42ee1055e3354a0127b5b25e4cf
[INFO] running `Command { std: "docker" "start" "-a" "b20e97fd72a0d0c3bf70491c5d0550ed701fd42ee1055e3354a0127b5b25e4cf", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]    Compiling syn v1.0.46
[INFO] [stderr]    Compiling regex-syntax v0.6.20
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking ascii v1.0.0
[INFO] [stderr]    Compiling hdf5 v0.7.0
[INFO] [stderr]     Checking os_str_bytes v2.3.2
[INFO] [stderr]     Checking glob v0.3.0
[INFO] [stderr]     Checking assert_approx_eq v1.1.0
[INFO] [stderr]     Checking hydro-srhd v0.1.0 (https://github.com/clemson-cal/hydro-srhd#fe217ed1)
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-bigint v0.3.0
[INFO] [stderr]    Compiling memoffset v0.5.6
[INFO] [stderr]    Compiling num-iter v0.1.41
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling num-rational v0.3.0
[INFO] [stderr]    Compiling libloading v0.6.4
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking lock_api v0.3.4
[INFO] [stderr]     Checking textwrap v0.12.1
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]    Compiling aho-corasick v0.7.14
[INFO] [stderr]     Checking crossbeam-queue v0.2.3
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]     Checking crossbeam v0.7.3
[INFO] [stderr]     Checking parking_lot_core v0.7.2
[INFO] [stderr]     Checking hdf5-types v0.7.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking parking_lot v0.10.2
[INFO] [stderr]     Checking num-complex v0.3.0
[INFO] [stderr]    Compiling regex v1.4.1
[INFO] [stderr]     Checking num v0.3.0
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr]     Checking godunov-core v0.1.0 (https://github.com/clemson-cal/godunov-core#e3ddfe50)
[INFO] [stderr]     Checking ndarray-ops v0.1.0 (https://github.com/clemson-cal/ndarray-ops#5c5e6424)
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-45e6e4181119c35b/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55ef45dd22d0 - std::backtrace_rs::backtrace::libunwind::trace::h7cf3ca97bd83fbab
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x55ef45dd22d0 - std::backtrace_rs::backtrace::trace_unsynchronized::h5a69c674b2d9ea5c
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x55ef45dd22d0 - std::sys_common::backtrace::_print_fmt::hdf72478dfcb50678
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x55ef45dd22d0 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h1e0bdbb35e83deca
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x55ef45df043c - core::fmt::write::he67f9b17bcb7ee73
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/fmt/mod.rs:1080
[INFO] [stderr]      5:     0x55ef45dceea2 - std::io::Write::write_fmt::hac97d5cb5753e2ec
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/io/mod.rs:1516
[INFO] [stderr]      6:     0x55ef45dd45dd - std::sys_common::backtrace::_print::haa20918e28a126c5
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x55ef45dd45dd - std::sys_common::backtrace::print::h49e772a4873d9076
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x55ef45dd45dd - std::panicking::default_hook::{{closure}}::hb218b305d15e3f11
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:208
[INFO] [stderr]      9:     0x55ef45dd4288 - std::panicking::default_hook::h63997b7b949e1ce0
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:227
[INFO] [stderr]     10:     0x55ef45dd4cc1 - std::panicking::rust_panic_with_hook::hb54f09ccadf64bd3
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:577
[INFO] [stderr]     11:     0x55ef45bd0c5c - std::panicking::begin_panic::{{closure}}::h09370bc4c066cbdf
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:506
[INFO] [stderr]     12:     0x55ef45bc0c79 - std::sys_common::backtrace::__rust_end_short_backtrace::hdcec2fcc0f79b2a3
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x55ef45bd0b87 - std::panicking::begin_panic::h74a90b6fdf6aa66c
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:505
[INFO] [stderr]     14:     0x55ef45ba620c - build_script_build::LibrarySearcher::try_locate_hdf5_library::hc917336f9f200a3f
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549
[INFO] [stderr]     15:     0x55ef45ba7ad1 - build_script_build::main::h6162f9333e272af8
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647
[INFO] [stderr]     16:     0x55ef45bae24b - core::ops::function::FnOnce::call_once::h21a1bc6fd3460caa
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:227
[INFO] [stderr]     17:     0x55ef45bb543e - std::sys_common::backtrace::__rust_begin_short_backtrace::hab3e792998b3c818
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:137
[INFO] [stderr]     18:     0x55ef45bb31d1 - std::rt::lang_start::{{closure}}::hb76bfc87b4e13b7d
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:66
[INFO] [stderr]     19:     0x55ef45dd50e7 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h908982dfc31b926f
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:259
[INFO] [stderr]     20:     0x55ef45dd50e7 - std::panicking::try::do_call::h92777899503b7584
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:381
[INFO] [stderr]     21:     0x55ef45dd50e7 - std::panicking::try::h8815656b2b76e792
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:345
[INFO] [stderr]     22:     0x55ef45dd50e7 - std::panic::catch_unwind::h112ab81228f50b46
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panic.rs:382
[INFO] [stderr]     23:     0x55ef45dd50e7 - std::rt::lang_start_internal::h1772a706c7575c24
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:51
[INFO] [stderr]     24:     0x55ef45bb31a7 - std::rt::lang_start::h66b2fcaeec6dd44b
[INFO] [stderr]                                  at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:65
[INFO] [stderr]     25:     0x55ef45ba914a - main
[INFO] [stderr]     26:     0x7f144cdbe0b3 - __libc_start_main
[INFO] [stderr]     27:     0x55ef45ba10be - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "b20e97fd72a0d0c3bf70491c5d0550ed701fd42ee1055e3354a0127b5b25e4cf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b20e97fd72a0d0c3bf70491c5d0550ed701fd42ee1055e3354a0127b5b25e4cf", kill_on_drop: false }`
[INFO] [stdout] b20e97fd72a0d0c3bf70491c5d0550ed701fd42ee1055e3354a0127b5b25e4cf