[INFO] cloning repository https://github.com/TyberiusPrime/snpdiffrs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TyberiusPrime/snpdiffrs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fsnpdiffrs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fsnpdiffrs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8e0098179c6580dfd1641673f9c3a4f90fc05f7c
[INFO] checking TyberiusPrime/snpdiffrs against beta for pr-78714
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fsnpdiffrs" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/TyberiusPrime/snpdiffrs on toolchain beta
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-3/source/.cargo/config
[INFO] started tweaking git repo https://github.com/TyberiusPrime/snpdiffrs
[INFO] finished tweaking git repo https://github.com/TyberiusPrime/snpdiffrs
[INFO] tweaked toml for git repo https://github.com/TyberiusPrime/snpdiffrs written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate git repo https://github.com/TyberiusPrime/snpdiffrs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] error: the lock file /workspace/builds/worker-3/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/rust-bio/rust-htslib/`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded ndarray-stats v0.3.0
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] [stderr]   Downloaded noisy_float v0.1.13
[INFO] [stderr]   Downloaded progressing v3.0.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3505c185e7c5402be70cfec67c859436b87d88d26481b102d018c1c57bfec4c5
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "3505c185e7c5402be70cfec67c859436b87d88d26481b102d018c1c57bfec4c5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3505c185e7c5402be70cfec67c859436b87d88d26481b102d018c1c57bfec4c5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3505c185e7c5402be70cfec67c859436b87d88d26481b102d018c1c57bfec4c5", kill_on_drop: false }`
[INFO] [stdout] 3505c185e7c5402be70cfec67c859436b87d88d26481b102d018c1c57bfec4c5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 93aa3ce3f34b09c9e32803c9a54b0f95ec335dc710e9b4a908738a943cc9bc3e
[INFO] running `Command { std: "docker" "start" "-a" "93aa3ce3f34b09c9e32803c9a54b0f95ec335dc710e9b4a908738a943cc9bc3e", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.80
[INFO] [stderr]    Compiling syn v1.0.48
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rayon-core v1.9.0
[INFO] [stderr]    Compiling slog v2.5.2
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling nix v0.18.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking take_mut v0.2.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling crossbeam-utils v0.8.0
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling rayon v1.5.0
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking progressing v3.0.2
[INFO] [stderr]     Checking crossbeam-channel v0.4.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking crossbeam-epoch v0.9.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.0
[INFO] [stderr]     Checking crossbeam v0.7.3
[INFO] [stderr]     Checking slog-async v2.5.0
[INFO] [stderr]     Checking crossbeam-deque v0.8.0
[INFO] [stderr]     Checking num-integer v0.1.44
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking noisy_float v0.1.13
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking dirs-sys v0.3.5
[INFO] [stderr]     Checking time v0.1.44
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]     Checking dirs v2.0.2
[INFO] [stderr]     Checking threadpool v1.8.1
[INFO] [stderr]     Checking term v0.6.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling cc v1.0.62
[INFO] [stderr]     Checking chrono v0.4.19
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling openssl-src v111.12.0+1.1.1h
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.38+curl-7.73.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling hts-sys v1.11.0 (https://github.com/rust-bio/rust-htslib/#b008afe9)
[INFO] [stderr]     Checking slog-term v2.6.0
[INFO] [stderr]    Compiling serde_derive v1.0.117
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling thiserror-impl v1.0.22
[INFO] [stderr]     Checking thiserror v1.0.22
[INFO] [stderr]     Checking ndarray-stats v0.3.0
[INFO] [stderr]     Checking serde v1.0.117
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking toml v0.5.7
[INFO] [stderr]     Checking rust-htslib v0.34.1-alpha.0 (https://github.com/rust-bio/rust-htslib/#b008afe9)
[INFO] [stderr]     Checking snpdiffrs v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 22s
[INFO] running `Command { std: "docker" "inspect" "93aa3ce3f34b09c9e32803c9a54b0f95ec335dc710e9b4a908738a943cc9bc3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "93aa3ce3f34b09c9e32803c9a54b0f95ec335dc710e9b4a908738a943cc9bc3e", kill_on_drop: false }`
[INFO] [stdout] 93aa3ce3f34b09c9e32803c9a54b0f95ec335dc710e9b4a908738a943cc9bc3e