[INFO] cloning repository https://github.com/TuBieJun/stat_mut_sampleratio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TuBieJun/stat_mut_sampleratio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0163827d32c94da365c78519e8ce537f7b7a211c [INFO] checking TuBieJun/stat_mut_sampleratio against beta for pr-78714 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTuBieJun%2Fstat_mut_sampleratio" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/TuBieJun/stat_mut_sampleratio on toolchain beta [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] finished tweaking git repo https://github.com/TuBieJun/stat_mut_sampleratio [INFO] tweaked toml for git repo https://github.com/TuBieJun/stat_mut_sampleratio written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/TuBieJun/stat_mut_sampleratio already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 256799a36b7f5fdf41ca8172cdb9feed8b61d8f04a98c077d44d4e4275d871d2 [INFO] running `Command { std: "docker" "start" "-a" "256799a36b7f5fdf41ca8172cdb9feed8b61d8f04a98c077d44d4e4275d871d2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "256799a36b7f5fdf41ca8172cdb9feed8b61d8f04a98c077d44d4e4275d871d2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "256799a36b7f5fdf41ca8172cdb9feed8b61d8f04a98c077d44d4e4275d871d2", kill_on_drop: false }` [INFO] [stdout] 256799a36b7f5fdf41ca8172cdb9feed8b61d8f04a98c077d44d4e4275d871d2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f831d438085e8a850fcf6ad7eef367ce7e82467c10738381d0b73b9bd14d827d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f831d438085e8a850fcf6ad7eef367ce7e82467c10738381d0b73b9bd14d827d", kill_on_drop: false }` [INFO] [stderr] Checking libc v0.2.36 [INFO] [stderr] Checking atty v0.2.6 [INFO] [stderr] Checking clap v2.29.2 [INFO] [stderr] Checking stat_germline_pos v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `SubCommand` [INFO] [stdout] --> src/main.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SubCommand` [INFO] [stdout] --> src/main.rs:9:22 [INFO] [stdout] | [INFO] [stdout] 9 | use clap::{Arg, App, SubCommand}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let mut f = File::open(vcf_l) [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:40:21 [INFO] [stdout] | [INFO] [stdout] 40 | let mut dp_info:Vec<&str>; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:58:25 [INFO] [stdout] | [INFO] [stdout] 58 | let mut n_index:usize; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:96:53 [INFO] [stdout] | [INFO] [stdout] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let mut f = File::open(vcf_l) [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:40:21 [INFO] [stdout] | [INFO] [stdout] 40 | let mut dp_info:Vec<&str>; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:58:25 [INFO] [stdout] | [INFO] [stdout] 58 | let mut n_index:usize; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:13:13 [INFO] [stdout] | [INFO] [stdout] 13 | D_germline:&mut HashMap>) -> u32 { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:96:53 [INFO] [stdout] | [INFO] [stdout] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:100:5 [INFO] [stdout] | [INFO] [stdout] 100 | writer.write(header.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | writer.write(info.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:155:13 [INFO] [stdout] | [INFO] [stdout] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:100:5 [INFO] [stdout] | [INFO] [stdout] 100 | writer.write(header.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:112:9 [INFO] [stdout] | [INFO] [stdout] 112 | writer.write(info.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `D_germline` should have a snake case name [INFO] [stdout] --> src/main.rs:155:13 [INFO] [stdout] | [INFO] [stdout] 155 | let mut D_germline:HashMap> = HashMap::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `d_germline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 6.06s [INFO] running `Command { std: "docker" "inspect" "f831d438085e8a850fcf6ad7eef367ce7e82467c10738381d0b73b9bd14d827d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f831d438085e8a850fcf6ad7eef367ce7e82467c10738381d0b73b9bd14d827d", kill_on_drop: false }` [INFO] [stdout] f831d438085e8a850fcf6ad7eef367ce7e82467c10738381d0b73b9bd14d827d