[INFO] cloning repository https://github.com/TianyiShi2001/protein
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TianyiShi2001/protein" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Fprotein", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Fprotein'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bd89e850f1b3ccaeabb7412abf1e3349aa6fd17b
[INFO] checking TianyiShi2001/protein against beta for pr-78714
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Fprotein" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/TianyiShi2001/protein on toolchain beta
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/TianyiShi2001/protein
[INFO] removed workspace from git repo https://github.com/TianyiShi2001/protein
[INFO] removed path dependency protein-analysis from git repo https://github.com/TianyiShi2001/protein
[INFO] removed path dependency protein-get from git repo https://github.com/TianyiShi2001/protein
[INFO] removed path dependency protein-io from git repo https://github.com/TianyiShi2001/protein
[INFO] finished tweaking git repo https://github.com/TianyiShi2001/protein
[INFO] tweaked toml for git repo https://github.com/TianyiShi2001/protein written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate git repo https://github.com/TianyiShi2001/protein already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr] error: the lock file /workspace/builds/worker-3/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6ec4d32fc042227fee5d90affcb27e2ba4cc167b5e78579d25162abcfb88fd34
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "6ec4d32fc042227fee5d90affcb27e2ba4cc167b5e78579d25162abcfb88fd34", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6ec4d32fc042227fee5d90affcb27e2ba4cc167b5e78579d25162abcfb88fd34", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6ec4d32fc042227fee5d90affcb27e2ba4cc167b5e78579d25162abcfb88fd34", kill_on_drop: false }`
[INFO] [stdout] 6ec4d32fc042227fee5d90affcb27e2ba4cc167b5e78579d25162abcfb88fd34
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e58ab615175e66531f5c0bdfdb43f3fbec9505eb7a046e8f469d1ba4a636c659
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "e58ab615175e66531f5c0bdfdb43f3fbec9505eb7a046e8f469d1ba4a636c659", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.48
[INFO] [stderr]    Compiling libc v0.2.80
[INFO] [stderr]     Checking once_cell v1.5.2
[INFO] [stderr]    Compiling lexical-core v0.7.4
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]     Checking dihedral v0.0.4
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]     Checking futures-channel v0.3.8
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking tracing v0.1.21
[INFO] [stderr]     Checking want v0.3.0
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking atoi v0.3.3
[INFO] [stderr]     Checking futures-task v0.3.8
[INFO] [stderr]     Checking iovec v0.1.4
[INFO] [stderr]     Checking net2 v0.2.35
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking openssl-sys v0.9.58
[INFO] [stderr]     Checking time v0.1.44
[INFO] [stderr]     Checking socket2 v0.3.16
[INFO] [stderr]     Checking flate2 v1.0.19
[INFO] [stderr]     Checking mio v0.6.22
[INFO] [stderr]     Checking openssl v0.10.30
[INFO] [stderr]     Checking tokio v0.2.23
[INFO] [stderr]     Checking native-tls v0.2.6
[INFO] [stderr]     Checking tokio-util v0.3.1
[INFO] [stderr]     Checking tokio-tls v0.3.1
[INFO] [stderr]    Compiling serde_derive v1.0.117
[INFO] [stderr]    Compiling pin-project-internal v0.4.27
[INFO] [stderr]    Compiling pin-project-internal v1.0.1
[INFO] [stderr]    Compiling strum_macros v0.19.4
[INFO] [stderr]     Checking strum v0.19.5
[INFO] [stderr]     Checking pin-project v1.0.1
[INFO] [stderr]     Checking futures-util v0.3.8
[INFO] [stderr]     Checking pin-project v0.4.27
[INFO] [stderr]     Checking tracing-futures v0.2.4
[INFO] [stderr]     Checking h2 v0.2.7
[INFO] [stderr]     Checking serde v1.0.117
[INFO] [stderr]     Checking hyper v0.13.9
[INFO] [stderr]     Checking chrono v0.4.19
[INFO] [stderr]     Checking serde_json v1.0.59
[INFO] [stderr]     Checking serde_urlencoded v0.6.1
[INFO] [stderr]     Checking bstr v0.2.14
[INFO] [stderr]     Checking csv v1.1.4
[INFO] [stderr]     Checking protein-core v0.1.7
[INFO] [stderr]     Checking nom-pdb v0.0.9
[INFO] [stderr]     Checking protein-analysis v0.0.1
[INFO] [stderr]     Checking protein-io v0.0.1
[INFO] [stderr]     Checking hyper-tls v0.4.3
[INFO] [stderr]     Checking reqwest v0.10.8
[INFO] [stderr]     Checking protein-get v0.0.2
[INFO] [stderr]     Checking protein v0.0.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 05s
[INFO] running `Command { std: "docker" "inspect" "e58ab615175e66531f5c0bdfdb43f3fbec9505eb7a046e8f469d1ba4a636c659", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e58ab615175e66531f5c0bdfdb43f3fbec9505eb7a046e8f469d1ba4a636c659", kill_on_drop: false }`
[INFO] [stdout] e58ab615175e66531f5c0bdfdb43f3fbec9505eb7a046e8f469d1ba4a636c659