[INFO] cloning repository https://github.com/Mimerme/Mimerme [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Mimerme/Mimerme" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] df63a69dd00123b2eb2ab3520f84fe54a79a107d [INFO] checking Mimerme/Mimerme against beta for pr-78714 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain beta [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Mimerme/Mimerme [INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme [INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f04bd8d035e515ef87e70f7c782030b3983f44c8df779294dd9628a17689aeac [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f04bd8d035e515ef87e70f7c782030b3983f44c8df779294dd9628a17689aeac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f04bd8d035e515ef87e70f7c782030b3983f44c8df779294dd9628a17689aeac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f04bd8d035e515ef87e70f7c782030b3983f44c8df779294dd9628a17689aeac", kill_on_drop: false }` [INFO] [stdout] f04bd8d035e515ef87e70f7c782030b3983f44c8df779294dd9628a17689aeac [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8037e4dd4190a4514d2a439f02112f2db4e16d83d52fbd83a53246f948d5e137 [INFO] running `Command { std: "docker" "start" "-a" "8037e4dd4190a4514d2a439f02112f2db4e16d83d52fbd83a53246f948d5e137", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling lazycell v1.2.1 [INFO] [stderr] Compiling serde v1.0.105 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking smallvec v1.2.0 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling clang-sys v0.29.2 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking unicode-normalization v0.1.12 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling serde_derive v1.0.105 [INFO] [stderr] Compiling snafu-derive v0.6.3 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Checking snafu v0.6.0 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Checking bio-types v0.6.0 [INFO] [stderr] Checking bincode v1.2.1 [INFO] [stderr] error: failed to run custom build command for `hts-sys v1.10.2` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-sys-7bdf53c306801b16/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#ifndef __APPLE__' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#endif' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o header.o header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION_TEXT "1.10.2"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o region.o region.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_libcurl.o hfile_libcurl.c [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hfile_libcurl.c:47:10: fatal error: curl/curl.h: No such file or directory [INFO] [stderr] 47 | #include [INFO] [stderr] | ^~~~~~~~~~~~~ [INFO] [stderr] compilation terminated. [INFO] [stderr] make: *** [Makefile:133: hfile_libcurl.o] Error 1 [INFO] [stderr] thread 'main' panicked at 'failed to build htslib', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86:9 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56027ae4c900 - std::backtrace_rs::backtrace::libunwind::trace::h7cf3ca97bd83fbab [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x56027ae4c900 - std::backtrace_rs::backtrace::trace_unsynchronized::h5a69c674b2d9ea5c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x56027ae4c900 - std::sys_common::backtrace::_print_fmt::hdf72478dfcb50678 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x56027ae4c900 - ::fmt::h1e0bdbb35e83deca [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x56027ae72f8c - core::fmt::write::he67f9b17bcb7ee73 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x56027ae481a2 - std::io::Write::write_fmt::hac97d5cb5753e2ec [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/io/mod.rs:1516 [INFO] [stderr] 6: 0x56027ae4f4ed - std::sys_common::backtrace::_print::haa20918e28a126c5 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x56027ae4f4ed - std::sys_common::backtrace::print::h49e772a4873d9076 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x56027ae4f4ed - std::panicking::default_hook::{{closure}}::hb218b305d15e3f11 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x56027ae4f198 - std::panicking::default_hook::h63997b7b949e1ce0 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x56027ae4fbd1 - std::panicking::rust_panic_with_hook::hb54f09ccadf64bd3 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x56027ada832c - std::panicking::begin_panic::{{closure}}::h1289a94ff21eed5c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x56027adaa099 - std::sys_common::backtrace::__rust_end_short_backtrace::ha913909a4a744641 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x56027ada8257 - std::panicking::begin_panic::h240a361def1163ea [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x56027a8523ff - build_script_build::main::h3fb8be33569872ce [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86 [INFO] [stderr] 15: 0x56027a8544db - core::ops::function::FnOnce::call_once::h9aa6ef7fad1d18ca [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:227 [INFO] [stderr] 16: 0x56027a8543fe - std::sys_common::backtrace::__rust_begin_short_backtrace::h4dd2b9131d6e5ef8 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 17: 0x56027a853e11 - std::rt::lang_start::{{closure}}::h8c24bdedd5b5e604 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:66 [INFO] [stderr] 18: 0x56027ae500e7 - core::ops::function::impls:: for &F>::call_once::h908982dfc31b926f [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:259 [INFO] [stderr] 19: 0x56027ae500e7 - std::panicking::try::do_call::h92777899503b7584 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:381 [INFO] [stderr] 20: 0x56027ae500e7 - std::panicking::try::h8815656b2b76e792 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:345 [INFO] [stderr] 21: 0x56027ae500e7 - std::panic::catch_unwind::h112ab81228f50b46 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panic.rs:382 [INFO] [stderr] 22: 0x56027ae500e7 - std::rt::lang_start_internal::h1772a706c7575c24 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:51 [INFO] [stderr] 23: 0x56027a853de7 - std::rt::lang_start::h5998b403f5fc8170 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:65 [INFO] [stderr] 24: 0x56027a85374a - main [INFO] [stderr] 25: 0x7f4b24d600b3 - __libc_start_main [INFO] [stderr] 26: 0x56027a8510de - _start [INFO] [stderr] 27: 0x0 - [INFO] running `Command { std: "docker" "inspect" "8037e4dd4190a4514d2a439f02112f2db4e16d83d52fbd83a53246f948d5e137", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8037e4dd4190a4514d2a439f02112f2db4e16d83d52fbd83a53246f948d5e137", kill_on_drop: false }` [INFO] [stdout] 8037e4dd4190a4514d2a439f02112f2db4e16d83d52fbd83a53246f948d5e137