[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 15f07e7e103cd4bd5474c7098c2c3d7a72ede2bd [INFO] checking 38/pyd4 against beta for pr-78714 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain beta [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d33e9de126846dfe794fae183e78a74b50e9b7c63fb13dadabd00b74ea704fcc [INFO] running `Command { std: "docker" "start" "-a" "d33e9de126846dfe794fae183e78a74b50e9b7c63fb13dadabd00b74ea704fcc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d33e9de126846dfe794fae183e78a74b50e9b7c63fb13dadabd00b74ea704fcc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d33e9de126846dfe794fae183e78a74b50e9b7c63fb13dadabd00b74ea704fcc", kill_on_drop: false }` [INFO] [stdout] d33e9de126846dfe794fae183e78a74b50e9b7c63fb13dadabd00b74ea704fcc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+beta" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] fa5fc39fc01a0ada114229523c8cc862d68f3a8822d3bdcf09f231d7d8f15613 [INFO] running `Command { std: "docker" "start" "-a" "fa5fc39fc01a0ada114229523c8cc862d68f3a8822d3bdcf09f231d7d8f15613", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling proc-macro-hack v0.5.18 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Checking smallvec v1.4.2 [INFO] [stderr] Compiling unindent v0.1.6 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Compiling inventory v0.1.9 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling pyo3 v0.12.1 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Checking instant v0.1.7 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Checking lock_api v0.4.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking parking_lot_core v0.8.0 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking parking_lot v0.11.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.1.13 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.1 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling ctor v0.1.15 [INFO] [stderr] Compiling inventory-impl v0.1.9 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling pyo3cls v0.12.1 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-dbdda071b5fae005/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-79c6b23402e16141/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-79c6b23402e16141/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5625d7956aa0 - std::backtrace_rs::backtrace::libunwind::trace::h7cf3ca97bd83fbab [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x5625d7956aa0 - std::backtrace_rs::backtrace::trace_unsynchronized::h5a69c674b2d9ea5c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5625d7956aa0 - std::sys_common::backtrace::_print_fmt::hdf72478dfcb50678 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x5625d7956aa0 - ::fmt::h1e0bdbb35e83deca [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x5625d797b85c - core::fmt::write::he67f9b17bcb7ee73 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x5625d7952eb2 - std::io::Write::write_fmt::hac97d5cb5753e2ec [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/io/mod.rs:1516 [INFO] [stderr] 6: 0x5625d79591dd - std::sys_common::backtrace::_print::haa20918e28a126c5 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x5625d79591dd - std::sys_common::backtrace::print::h49e772a4873d9076 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x5625d79591dd - std::panicking::default_hook::{{closure}}::hb218b305d15e3f11 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x5625d7958e88 - std::panicking::default_hook::h63997b7b949e1ce0 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x5625d79598c1 - std::panicking::rust_panic_with_hook::hb54f09ccadf64bd3 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x5625d73933fc - std::panicking::begin_panic::{{closure}}::h09370bc4c066cbdf [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x5625d7383559 - std::sys_common::backtrace::__rust_end_short_backtrace::hdcec2fcc0f79b2a3 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x5625d7393327 - std::panicking::begin_panic::h74a90b6fdf6aa66c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x5625d7373a18 - build_script_build::build_own_htslib::h043f9c141d8c12f7 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34 [INFO] [stderr] 15: 0x5625d7373ed5 - build_script_build::main::h783940e780e77179 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66 [INFO] [stderr] 16: 0x5625d737542b - core::ops::function::FnOnce::call_once::h062782118385437c [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x5625d7374c7e - std::sys_common::backtrace::__rust_begin_short_backtrace::he8a50ab75ff06715 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x5625d7375281 - std::rt::lang_start::{{closure}}::h3daac0268ab12891 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x5625d7959dd7 - core::ops::function::impls:: for &F>::call_once::h908982dfc31b926f [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x5625d7959dd7 - std::panicking::try::do_call::h92777899503b7584 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:381 [INFO] [stderr] 21: 0x5625d7959dd7 - std::panicking::try::h8815656b2b76e792 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panicking.rs:345 [INFO] [stderr] 22: 0x5625d7959dd7 - std::panic::catch_unwind::h112ab81228f50b46 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/panic.rs:382 [INFO] [stderr] 23: 0x5625d7959dd7 - std::rt::lang_start_internal::h1772a706c7575c24 [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x5625d7375257 - std::rt::lang_start::h6574aa35f9bb528d [INFO] [stderr] at /rustc/1219014599fd873fcb640b675d8a662150c74e40/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x5625d737451a - main [INFO] [stderr] 26: 0x7fbbb3ca30b3 - __libc_start_main [INFO] [stderr] 27: 0x5625d73730be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "fa5fc39fc01a0ada114229523c8cc862d68f3a8822d3bdcf09f231d7d8f15613", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fa5fc39fc01a0ada114229523c8cc862d68f3a8822d3bdcf09f231d7d8f15613", kill_on_drop: false }` [INFO] [stdout] fa5fc39fc01a0ada114229523c8cc862d68f3a8822d3bdcf09f231d7d8f15613