[INFO] fetching crate d4-hts 0.1.13... [INFO] checking d4-hts-0.1.13 against master#31ee872db5aae4750e3da1ca4ed1523c4356947f for pr-78461 [INFO] extracting crate d4-hts 0.1.13 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate d4-hts 0.1.13 on toolchain 31ee872db5aae4750e3da1ca4ed1523c4356947f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+31ee872db5aae4750e3da1ca4ed1523c4356947f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.1.13 [INFO] finished tweaking crates.io crate d4-hts 0.1.13 [INFO] tweaked toml for crates.io crate d4-hts 0.1.13 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+31ee872db5aae4750e3da1ca4ed1523c4356947f" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+31ee872db5aae4750e3da1ca4ed1523c4356947f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+31ee872db5aae4750e3da1ca4ed1523c4356947f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e1b5237572d680e9c26a852f92c59c0ee35b6371c81135bd1f16e94d0b3dfcff [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e1b5237572d680e9c26a852f92c59c0ee35b6371c81135bd1f16e94d0b3dfcff", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e1b5237572d680e9c26a852f92c59c0ee35b6371c81135bd1f16e94d0b3dfcff", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e1b5237572d680e9c26a852f92c59c0ee35b6371c81135bd1f16e94d0b3dfcff", kill_on_drop: false }` [INFO] [stdout] e1b5237572d680e9c26a852f92c59c0ee35b6371c81135bd1f16e94d0b3dfcff [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+31ee872db5aae4750e3da1ca4ed1523c4356947f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 62b79b76e7e391509d452bfa037d418d245a7e7aefe3d156e69e1bd3943d703a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "62b79b76e7e391509d452bfa037d418d245a7e7aefe3d156e69e1bd3943d703a", kill_on_drop: false }` [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling clang-sys v1.0.1 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling d4-hts v0.1.13 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-7a0c1e9e1482c093/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-ab30427546b143fb/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-ab30427546b143fb/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success()', build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x564154f89390 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x564154f89390 - std::backtrace_rs::backtrace::trace_unsynchronized::h881b9d30a8a89a0c [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x564154f89390 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x564154f89390 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x564154fae68c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x564154f857a2 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/io/mod.rs:1518:15 [INFO] [stderr] 6: 0x564154f8ba35 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x564154f8ba35 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x564154f8ba35 - std::panicking::default_hook::{{closure}}::h8d48653392f3b04c [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x564154f8b6d8 - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x564154f8c1d1 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x564154ce94ae - std::panicking::begin_panic::{{closure}}::he3d7732378ff4176 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/panicking.rs:522:9 [INFO] [stderr] 12: 0x564154d275a9 - std::sys_common::backtrace::__rust_end_short_backtrace::h9053ba42664a4087 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x564154ce93db - std::panicking::begin_panic::h03ef605202fe0ac2 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/panicking.rs:521:12 [INFO] [stderr] 14: 0x5641549f39c1 - build_script_build::build_own_htslib::h393dbc8c00704ad5 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:34:5 [INFO] [stderr] 15: 0x5641549f3e94 - build_script_build::main::h0f7e4bb7b5927e5c [INFO] [stderr] at /opt/rustwide/workdir/build.rs:66:9 [INFO] [stderr] 16: 0x5641549f4d4b - core::ops::function::FnOnce::call_once::h58d923acadf99f57 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x5641549f4c2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h2391a12f5d97c886 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x5641549f53a1 - std::rt::lang_start::{{closure}}::h9422f95e71cf0cf6 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x564154f8c5f7 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x564154f8c5f7 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x564154f8c5f7 - std::panicking::try::h068087b173f80a49 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x564154f8c5f7 - std::panic::catch_unwind::h1f8259807e825279 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/panic.rs:382:14 [INFO] [stderr] 23: 0x564154f8c5f7 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x5641549f5377 - std::rt::lang_start::hebae5c61e22ff701 [INFO] [stderr] at /rustc/31ee872db5aae4750e3da1ca4ed1523c4356947f/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x5641549f44ca - main [INFO] [stderr] 26: 0x7f3a300b60b3 - __libc_start_main [INFO] [stderr] 27: 0x5641549f30be - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "62b79b76e7e391509d452bfa037d418d245a7e7aefe3d156e69e1bd3943d703a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "62b79b76e7e391509d452bfa037d418d245a7e7aefe3d156e69e1bd3943d703a", kill_on_drop: false }` [INFO] [stdout] 62b79b76e7e391509d452bfa037d418d245a7e7aefe3d156e69e1bd3943d703a