[INFO] fetching crate netcdf-src 0.1.3... [INFO] checking netcdf-src-0.1.3 against master#0dce3f606e05cffab7361c132a399d3550ab0df8 for pr-78376 [INFO] extracting crate netcdf-src 0.1.3 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate netcdf-src 0.1.3 on toolchain 0dce3f606e05cffab7361c132a399d3550ab0df8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0dce3f606e05cffab7361c132a399d3550ab0df8" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-src 0.1.3 [INFO] finished tweaking crates.io crate netcdf-src 0.1.3 [INFO] tweaked toml for crates.io crate netcdf-src 0.1.3 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0dce3f606e05cffab7361c132a399d3550ab0df8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0dce3f606e05cffab7361c132a399d3550ab0df8" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+0dce3f606e05cffab7361c132a399d3550ab0df8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6002b19a3d155b8d5d3b9cdcc506a38856697451035a45cc195400baf70d5d67 [INFO] running `Command { std: "docker" "start" "-a" "6002b19a3d155b8d5d3b9cdcc506a38856697451035a45cc195400baf70d5d67", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6002b19a3d155b8d5d3b9cdcc506a38856697451035a45cc195400baf70d5d67", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6002b19a3d155b8d5d3b9cdcc506a38856697451035a45cc195400baf70d5d67", kill_on_drop: false }` [INFO] [stdout] 6002b19a3d155b8d5d3b9cdcc506a38856697451035a45cc195400baf70d5d67 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+0dce3f606e05cffab7361c132a399d3550ab0df8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f3871ba56623423bb2742050933d532148c149e9b170e4682fcc407295282c3c [INFO] running `Command { std: "docker" "start" "-a" "f3871ba56623423bb2742050933d532148c149e9b170e4682fcc407295282c3c", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.61 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling regex-syntax v0.6.20 [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling aho-corasick v0.7.14 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling hdf5-src v0.7.0 [INFO] [stderr] Compiling netcdf-src v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Compiling regex v1.4.1 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-53e578f55a3fae4e/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5560c1ff1e00 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x5560c1ff1e00 - std::backtrace_rs::backtrace::trace_unsynchronized::h881b9d30a8a89a0c [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5560c1ff1e00 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5560c1ff1e00 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5560c201088c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/core/src/fmt/mod.rs:1076:17 [INFO] [stderr] 5: 0x5560c1fee9b2 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x5560c1ff42c5 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5560c1ff42c5 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5560c1ff42c5 - std::panicking::default_hook::{{closure}}::h8d48653392f3b04c [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5560c1ff3f68 - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x5560c1ff4a61 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x5560c1f4e31e - std::panicking::begin_panic::{{closure}}::hcd2bd10c413d894b [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/panicking.rs:522:9 [INFO] [stderr] 12: 0x5560c1f20a69 - std::sys_common::backtrace::__rust_end_short_backtrace::h5e575efacc5c0eb3 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5560c1f4e24b - std::panicking::begin_panic::h70660cd3a1c0821c [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/panicking.rs:521:12 [INFO] [stderr] 14: 0x5560c1dd006b - build_script_build::LibrarySearcher::try_locate_hdf5_library::hcedc194387fdbfdc [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x5560c1dd18d3 - build_script_build::main::h94871d800cbae495 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x5560c1dd7f1b - core::ops::function::FnOnce::call_once::heb6eb6c4c68edbae [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x5560c1dded3e - std::sys_common::backtrace::__rust_begin_short_backtrace::hc82efc736c2cfcc5 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x5560c1ddc261 - std::rt::lang_start::{{closure}}::h5f156c4266f2c459 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x5560c1ff4e87 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x5560c1ff4e87 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x5560c1ff4e87 - std::panicking::try::hcc68eba0f7d51b82 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x5560c1ff4e87 - std::panic::catch_unwind::h2e8cfcfcf4f9eb6d [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/panic.rs:382:14 [INFO] [stderr] 23: 0x5560c1ff4e87 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x5560c1ddc237 - std::rt::lang_start::h61e48583446c8ccd [INFO] [stderr] at /rustc/0dce3f606e05cffab7361c132a399d3550ab0df8/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x5560c1dd2f1a - main [INFO] [stderr] 26: 0x7f5918fd10b3 - __libc_start_main [INFO] [stderr] 27: 0x5560c1dcb0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "f3871ba56623423bb2742050933d532148c149e9b170e4682fcc407295282c3c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f3871ba56623423bb2742050933d532148c149e9b170e4682fcc407295282c3c", kill_on_drop: false }` [INFO] [stdout] f3871ba56623423bb2742050933d532148c149e9b170e4682fcc407295282c3c