[INFO] fetching crate d4-hts 0.1.13... [INFO] checking d4-hts-0.1.13 against try#b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8 for pr-78363 [INFO] extracting crate d4-hts 0.1.13 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate d4-hts 0.1.13 on toolchain b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.1.13 [INFO] finished tweaking crates.io crate d4-hts 0.1.13 [INFO] tweaked toml for crates.io crate d4-hts 0.1.13 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6ab8100ff69459008bec9226fdcbc76aa16f2cd679bc150a12c0d44ce617f045 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6ab8100ff69459008bec9226fdcbc76aa16f2cd679bc150a12c0d44ce617f045", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6ab8100ff69459008bec9226fdcbc76aa16f2cd679bc150a12c0d44ce617f045", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6ab8100ff69459008bec9226fdcbc76aa16f2cd679bc150a12c0d44ce617f045", kill_on_drop: false }` [INFO] [stdout] 6ab8100ff69459008bec9226fdcbc76aa16f2cd679bc150a12c0d44ce617f045 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7dcba9521619f307619fe2bd1db9bd2f1db4de6ef14a684e0c8c7db909ca97b9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7dcba9521619f307619fe2bd1db9bd2f1db4de6ef14a684e0c8c7db909ca97b9", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.20 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling clang-sys v1.0.1 [INFO] [stderr] Compiling aho-corasick v0.7.14 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.4.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-hts v0.1.13 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-18c39e1f5abb5dd7/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-bfb3c6ee23143e71/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-bfb3c6ee23143e71/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success()', build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560bd5d33340 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x560bd5d33340 - std::backtrace_rs::backtrace::trace_unsynchronized::h881b9d30a8a89a0c [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x560bd5d33340 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x560bd5d33340 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x560bd5d586cc - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/core/src/fmt/mod.rs:1076:17 [INFO] [stderr] 5: 0x560bd5d2f752 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x560bd5d359e5 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x560bd5d359e5 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x560bd5d359e5 - std::panicking::default_hook::{{closure}}::h8d48653392f3b04c [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x560bd5d35688 - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x560bd5d36181 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x560bd5d0262e - std::panicking::begin_panic::{{closure}}::h25871770618fd2af [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/panicking.rs:522:9 [INFO] [stderr] 12: 0x560bd5d0e199 - std::sys_common::backtrace::__rust_end_short_backtrace::h92c97c7617ec1a32 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x560bd5d0255b - std::panicking::begin_panic::h433db2c284a4a91f [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/panicking.rs:521:12 [INFO] [stderr] 14: 0x560bd57a19c1 - build_script_build::build_own_htslib::h1e74240613bbaebf [INFO] [stderr] at /opt/rustwide/workdir/build.rs:34:5 [INFO] [stderr] 15: 0x560bd57a1e94 - build_script_build::main::hcbdfd1d49d4c2aff [INFO] [stderr] at /opt/rustwide/workdir/build.rs:66:9 [INFO] [stderr] 16: 0x560bd57a340b - core::ops::function::FnOnce::call_once::h0c8f5fef25ae9eea [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x560bd57a2c2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h97156366c04ba050 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x560bd57a3241 - std::rt::lang_start::{{closure}}::h80d4771d4aecd035 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x560bd5d365a7 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x560bd5d365a7 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x560bd5d365a7 - std::panicking::try::hcc68eba0f7d51b82 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x560bd5d365a7 - std::panic::catch_unwind::h2e8cfcfcf4f9eb6d [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/panic.rs:382:14 [INFO] [stderr] 23: 0x560bd5d365a7 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x560bd57a3217 - std::rt::lang_start::h491502b5052c5c71 [INFO] [stderr] at /rustc/b2c2190fa7bf856bb0ed5e8806266e3a2135c6f8/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x560bd57a24ca - main [INFO] [stderr] 26: 0x7fc05c2800b3 - __libc_start_main [INFO] [stderr] 27: 0x560bd57a10be - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "7dcba9521619f307619fe2bd1db9bd2f1db4de6ef14a684e0c8c7db909ca97b9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7dcba9521619f307619fe2bd1db9bd2f1db4de6ef14a684e0c8c7db909ca97b9", kill_on_drop: false }` [INFO] [stdout] 7dcba9521619f307619fe2bd1db9bd2f1db4de6ef14a684e0c8c7db909ca97b9