[INFO] fetching crate neuro 0.1.0... [INFO] checking neuro-0.1.0 against master#430feb24a46993e5073c1bb1b39da190d83fa2bf for pr-78363 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain 430feb24a46993e5073c1bb1b39da190d83fa2bf [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 0285f2d99ee54c0e9a8469e676d6837f9e9a8537226452e73d9e62007c0bca3c [INFO] running `Command { std: "docker" "start" "-a" "0285f2d99ee54c0e9a8469e676d6837f9e9a8537226452e73d9e62007c0bca3c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0285f2d99ee54c0e9a8469e676d6837f9e9a8537226452e73d9e62007c0bca3c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0285f2d99ee54c0e9a8469e676d6837f9e9a8537226452e73d9e62007c0bca3c", kill_on_drop: false }` [INFO] [stdout] 0285f2d99ee54c0e9a8469e676d6837f9e9a8537226452e73d9e62007c0bca3c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cd9a220d814b41977392bd5a8069672d127e3c32a391beab4e05babb29201151 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cd9a220d814b41977392bd5a8069672d127e3c32a391beab4e05babb29201151", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Checking rand_core v0.4.2 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking adler32 v1.0.4 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling rayon-core v1.7.0 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking lzw v0.10.0 [INFO] [stderr] Checking color_quant v1.0.1 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Checking bytemuck v1.2.0 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking scoped_threadpool v0.1.9 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking lock_api v0.2.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Checking rand_jitter v0.1.4 [INFO] [stderr] Checking inflate v0.4.5 [INFO] [stderr] Checking miniz_oxide v0.3.6 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking gif v0.10.3 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Checking walkdir v2.3.1 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Compiling memoffset v0.5.3 [INFO] [stderr] Compiling parking_lot_core v0.5.0 [INFO] [stderr] Compiling parking_lot v0.8.0 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking c2-chacha v0.2.3 [INFO] [stderr] Compiling aho-corasick v0.7.9 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking smallvec v0.6.13 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking deflate v0.7.20 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Compiling regex v1.3.4 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-fe0d0691f255e721/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560e02f23250 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x560e02f23250 - std::backtrace_rs::backtrace::trace_unsynchronized::h881b9d30a8a89a0c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x560e02f23250 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x560e02f23250 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x560e02f41bec - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/fmt/mod.rs:1076:17 [INFO] [stderr] 5: 0x560e02f1fe02 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x560e02f25715 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x560e02f25715 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x560e02f25715 - std::panicking::default_hook::{{closure}}::h8d48653392f3b04c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x560e02f253b8 - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x560e02f25eb1 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x560e02e1536e - std::panicking::begin_panic::{{closure}}::hb4c70f24855c801d [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:522:9 [INFO] [stderr] 12: 0x560e02e3bfc9 - std::sys_common::backtrace::__rust_end_short_backtrace::hf87038f7d046e2f4 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x560e02e1529b - std::panicking::begin_panic::h795bdcca85126e19 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:521:12 [INFO] [stderr] 14: 0x560e02d0136b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h5e6c79b09421c3bb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] 15: 0x560e02d0266b - build_script_build::main::hd356cb5835f14f19 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605:5 [INFO] [stderr] 16: 0x560e02d070db - core::ops::function::FnOnce::call_once::h9de3473127c5c67f [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x560e02d0c44e - std::sys_common::backtrace::__rust_begin_short_backtrace::h3e7cf39c4c28a9e8 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x560e02d08381 - std::rt::lang_start::{{closure}}::hca3ba5f92c4b812e [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x560e02f262d7 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x560e02f262d7 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x560e02f262d7 - std::panicking::try::hcc68eba0f7d51b82 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x560e02f262d7 - std::panic::catch_unwind::h2e8cfcfcf4f9eb6d [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panic.rs:382:14 [INFO] [stderr] 23: 0x560e02f262d7 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x560e02d08357 - std::rt::lang_start::hdf45214cbdc50f6a [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x560e02d031da - main [INFO] [stderr] 26: 0x7f52130130b3 - __libc_start_main [INFO] [stderr] 27: 0x560e02cfd0ce - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "cd9a220d814b41977392bd5a8069672d127e3c32a391beab4e05babb29201151", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cd9a220d814b41977392bd5a8069672d127e3c32a391beab4e05babb29201151", kill_on_drop: false }` [INFO] [stdout] cd9a220d814b41977392bd5a8069672d127e3c32a391beab4e05babb29201151