[INFO] fetching crate netcdf-src 0.1.3... [INFO] checking netcdf-src-0.1.3 against master#430feb24a46993e5073c1bb1b39da190d83fa2bf for pr-78363 [INFO] extracting crate netcdf-src 0.1.3 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate netcdf-src 0.1.3 on toolchain 430feb24a46993e5073c1bb1b39da190d83fa2bf [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-src 0.1.3 [INFO] finished tweaking crates.io crate netcdf-src 0.1.3 [INFO] tweaked toml for crates.io crate netcdf-src 0.1.3 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] ce462c143e38c6a3b3185ad18f095276ac76c173ccbccb17adfccb2b93c55d2f [INFO] running `Command { std: "docker" "start" "-a" "ce462c143e38c6a3b3185ad18f095276ac76c173ccbccb17adfccb2b93c55d2f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ce462c143e38c6a3b3185ad18f095276ac76c173ccbccb17adfccb2b93c55d2f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ce462c143e38c6a3b3185ad18f095276ac76c173ccbccb17adfccb2b93c55d2f", kill_on_drop: false }` [INFO] [stdout] ce462c143e38c6a3b3185ad18f095276ac76c173ccbccb17adfccb2b93c55d2f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 3279b189eaa7f9007f93457f19062d60a4ecc8089fc646ba397a6b1fbd7761be [INFO] running `Command { std: "docker" "start" "-a" "3279b189eaa7f9007f93457f19062d60a4ecc8089fc646ba397a6b1fbd7761be", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.20 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling hdf5-src v0.7.0 [INFO] [stderr] Compiling netcdf-src v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling aho-corasick v0.7.14 [INFO] [stderr] Compiling regex v1.4.1 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-427d9da9fe230efe/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ee86d18e00 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55ee86d18e00 - std::backtrace_rs::backtrace::trace_unsynchronized::h881b9d30a8a89a0c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55ee86d18e00 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55ee86d18e00 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55ee86d3788c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/fmt/mod.rs:1076:17 [INFO] [stderr] 5: 0x55ee86d159b2 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x55ee86d1b2c5 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55ee86d1b2c5 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55ee86d1b2c5 - std::panicking::default_hook::{{closure}}::h8d48653392f3b04c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55ee86d1af68 - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55ee86d1ba61 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x55ee86c7531e - std::panicking::begin_panic::{{closure}}::hcd2bd10c413d894b [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:522:9 [INFO] [stderr] 12: 0x55ee86c47a69 - std::sys_common::backtrace::__rust_end_short_backtrace::h5e575efacc5c0eb3 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55ee86c7524b - std::panicking::begin_panic::h70660cd3a1c0821c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:521:12 [INFO] [stderr] 14: 0x55ee86af706b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h2888664125becc7c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55ee86af88d3 - build_script_build::main::he7c82a48c21543c3 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55ee86afed2b - core::ops::function::FnOnce::call_once::hc05e1c2129973792 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55ee86b05d3e - std::sys_common::backtrace::__rust_begin_short_backtrace::h03ba513466cc35ea [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55ee86b03261 - std::rt::lang_start::{{closure}}::h1e8c69e5feda3602 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55ee86d1be87 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55ee86d1be87 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x55ee86d1be87 - std::panicking::try::hcc68eba0f7d51b82 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x55ee86d1be87 - std::panic::catch_unwind::h2e8cfcfcf4f9eb6d [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panic.rs:382:14 [INFO] [stderr] 23: 0x55ee86d1be87 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55ee86b03237 - std::rt::lang_start::h5db6c2ea3d68e4bf [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55ee86af9f1a - main [INFO] [stderr] 26: 0x7ff3a96620b3 - __libc_start_main [INFO] [stderr] 27: 0x55ee86af20be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "3279b189eaa7f9007f93457f19062d60a4ecc8089fc646ba397a6b1fbd7761be", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3279b189eaa7f9007f93457f19062d60a4ecc8089fc646ba397a6b1fbd7761be", kill_on_drop: false }` [INFO] [stdout] 3279b189eaa7f9007f93457f19062d60a4ecc8089fc646ba397a6b1fbd7761be