[INFO] cloning repository https://github.com/hisakatha/extract-bam-unique-alignment
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/hisakatha/extract-bam-unique-alignment" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ebbaf8b3765abcae97fb57246ebdc215b5e30d9c
[INFO] checking hisakatha/extract-bam-unique-alignment against master#430feb24a46993e5073c1bb1b39da190d83fa2bf for pr-78363
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment" "/workspace/builds/worker-0/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/hisakatha/extract-bam-unique-alignment on toolchain 430feb24a46993e5073c1bb1b39da190d83fa2bf
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment
[INFO] finished tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment
[INFO] tweaked toml for git repo https://github.com/hisakatha/extract-bam-unique-alignment written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] crate git repo https://github.com/hisakatha/extract-bam-unique-alignment already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 93be5819ab16308d09a9c2c08cf9ac50b5cdb863be6ee58062e5386ec15eb597
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "93be5819ab16308d09a9c2c08cf9ac50b5cdb863be6ee58062e5386ec15eb597", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "93be5819ab16308d09a9c2c08cf9ac50b5cdb863be6ee58062e5386ec15eb597", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "93be5819ab16308d09a9c2c08cf9ac50b5cdb863be6ee58062e5386ec15eb597", kill_on_drop: false }`
[INFO] [stdout] 93be5819ab16308d09a9c2c08cf9ac50b5cdb863be6ee58062e5386ec15eb597
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] af3589450cbb47e102543bc567aff42ccbe82061891cfe2e53af1bda891cc020
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "af3589450cbb47e102543bc567aff42ccbe82061891cfe2e53af1bda891cc020", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling syn v1.0.44
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]     Checking tinyvec v0.3.4
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking regex-syntax v0.6.19
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling cc v1.0.61
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]    Compiling openssl-src v111.12.0+1.1.1h
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling hts-sys v1.10.3
[INFO] [stderr]     Checking regex v1.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling thiserror-impl v1.0.21
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]     Checking thiserror v1.0.21
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking rust-htslib v0.32.0
[INFO] [stderr]     Checking extract_bam_unique_alignment v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 19s
[INFO] running `Command { std: "docker" "inspect" "af3589450cbb47e102543bc567aff42ccbe82061891cfe2e53af1bda891cc020", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "af3589450cbb47e102543bc567aff42ccbe82061891cfe2e53af1bda891cc020", kill_on_drop: false }`
[INFO] [stdout] af3589450cbb47e102543bc567aff42ccbe82061891cfe2e53af1bda891cc020