[INFO] cloning repository https://github.com/clemson-cal/app-binary2d
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-binary2d" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 87a91bc3bfdde1978eecb16fdcd004a835b44806
[INFO] checking clemson-cal/app-binary2d against master#430feb24a46993e5073c1bb1b39da190d83fa2bf for pr-78363
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d" "/workspace/builds/worker-7/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/clemson-cal/app-binary2d on toolchain 430feb24a46993e5073c1bb1b39da190d83fa2bf
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/clemson-cal/app-binary2d
[INFO] finished tweaking git repo https://github.com/clemson-cal/app-binary2d
[INFO] tweaked toml for git repo https://github.com/clemson-cal/app-binary2d written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate git repo https://github.com/clemson-cal/app-binary2d already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4b06eb018d21a868e9bb64598d215f570fd47cc281d0203e008dd428e92e34ee
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "4b06eb018d21a868e9bb64598d215f570fd47cc281d0203e008dd428e92e34ee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4b06eb018d21a868e9bb64598d215f570fd47cc281d0203e008dd428e92e34ee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4b06eb018d21a868e9bb64598d215f570fd47cc281d0203e008dd428e92e34ee", kill_on_drop: false }`
[INFO] [stdout] 4b06eb018d21a868e9bb64598d215f570fd47cc281d0203e008dd428e92e34ee
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2c60d238541d937dd8bdc8752ade7605c0d1abeb21f7a8d3816459ab7d70b0e8
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "2c60d238541d937dd8bdc8752ade7605c0d1abeb21f7a8d3816459ab7d70b0e8", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.21
[INFO] [stderr]    Compiling syn v1.0.41
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking ascii v1.0.0
[INFO] [stderr]    Compiling hdf5 v0.7.0
[INFO] [stderr]     Checking hashbrown v0.9.0
[INFO] [stderr]     Checking hydro-iso2d v0.1.0 (https://github.com/clemson-cal/hydro-iso2d#3efbf6d7)
[INFO] [stderr]     Checking glob v0.3.0
[INFO] [stderr]     Checking kepler-two-body v0.1.0 (https://github.com/clemson-cal/kepler-two-body#d42ade30)
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-bigint v0.3.0
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling num-rational v0.3.0
[INFO] [stderr]    Compiling num-iter v0.1.41
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling libloading v0.6.3
[INFO] [stderr]     Checking parking_lot_core v0.7.2
[INFO] [stderr]     Checking hdf5-types v0.7.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking crossbeam-channel v0.4.4
[INFO] [stderr]     Checking indexmap v1.6.0
[INFO] [stderr]     Checking crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]     Checking parking_lot v0.10.2
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]     Checking crossbeam v0.7.3
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking num-complex v0.3.0
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]     Checking num v0.3.0
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr]     Checking godunov-core v0.1.0 (https://github.com/clemson-cal/godunov-core#49b75883)
[INFO] [stderr]     Checking ndarray-ops v0.1.0 (https://github.com/clemson-cal/ndarray-ops#6e8165ff)
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-af63aef5e0dc3944/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55a842814ed0 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5
[INFO] [stderr]      1:     0x55a842814ed0 - std::backtrace_rs::backtrace::trace_unsynchronized::h881b9d30a8a89a0c
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55a842814ed0 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x55a842814ed0 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h8d62bbfda6d5c836
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x55a84283395c - core::fmt::write::h1857a60b204f1b6a
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/fmt/mod.rs:1076:17
[INFO] [stderr]      5:     0x55a842811a82 - std::io::Write::write_fmt::h16a9fe7680ac245c
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/io/mod.rs:1516:15
[INFO] [stderr]      6:     0x55a842817395 - std::sys_common::backtrace::_print::h9ba51a6db618de7d
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x55a842817395 - std::sys_common::backtrace::print::h5f20e41c85e91716
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x55a842817395 - std::panicking::default_hook::{{closure}}::h8d48653392f3b04c
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x55a842817038 - std::panicking::default_hook::hb3948d1f74b6ff4c
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:227:9
[INFO] [stderr]     10:     0x55a842817b31 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:593:17
[INFO] [stderr]     11:     0x55a8427f192e - std::panicking::begin_panic::{{closure}}::h3173db7940123010
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:522:9
[INFO] [stderr]     12:     0x55a8427f10d9 - std::sys_common::backtrace::__rust_end_short_backtrace::h7d311a04a0d33a8c
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x55a8427f185b - std::panicking::begin_panic::hbabaa2f90177f933
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:521:12
[INFO] [stderr]     14:     0x55a8425f006b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h6d81321f1cbe28bf
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]     15:     0x55a8425f18d3 - build_script_build::main::h8eee34da194032bf
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9
[INFO] [stderr]     16:     0x55a8425f76fb - core::ops::function::FnOnce::call_once::h562a7efd4f107ef6
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x55a8425fe11e - std::sys_common::backtrace::__rust_begin_short_backtrace::h4bfcf0867b08a13a
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x55a8425f88f1 - std::rt::lang_start::{{closure}}::h4cb2aa53717c6526
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:66:18
[INFO] [stderr]     19:     0x55a842817f57 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h3f3ba5d1e0ce8d49
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x55a842817f57 - std::panicking::try::do_call::hd7a374fc87b951e7
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:381:40
[INFO] [stderr]     21:     0x55a842817f57 - std::panicking::try::hcc68eba0f7d51b82
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:345:19
[INFO] [stderr]     22:     0x55a842817f57 - std::panic::catch_unwind::h2e8cfcfcf4f9eb6d
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panic.rs:382:14
[INFO] [stderr]     23:     0x55a842817f57 - std::rt::lang_start_internal::h8ff82302dd620b52
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:51:25
[INFO] [stderr]     24:     0x55a8425f88c7 - std::rt::lang_start::h0b1cefec69d5755f
[INFO] [stderr]                                  at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:65:5
[INFO] [stderr]     25:     0x55a8425f2f1a - main
[INFO] [stderr]     26:     0x7f65cbb220b3 - __libc_start_main
[INFO] [stderr]     27:     0x55a8425eb0be - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "2c60d238541d937dd8bdc8752ade7605c0d1abeb21f7a8d3816459ab7d70b0e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2c60d238541d937dd8bdc8752ade7605c0d1abeb21f7a8d3816459ab7d70b0e8", kill_on_drop: false }`
[INFO] [stdout] 2c60d238541d937dd8bdc8752ade7605c0d1abeb21f7a8d3816459ab7d70b0e8