[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 15f07e7e103cd4bd5474c7098c2c3d7a72ede2bd [INFO] checking 38/pyd4 against master#430feb24a46993e5073c1bb1b39da190d83fa2bf for pr-78363 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 430feb24a46993e5073c1bb1b39da190d83fa2bf [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1fcd2b6b381102e7d7dd1313e5f4d0a41daad0258ba095e2acaad441c1521039 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1fcd2b6b381102e7d7dd1313e5f4d0a41daad0258ba095e2acaad441c1521039", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1fcd2b6b381102e7d7dd1313e5f4d0a41daad0258ba095e2acaad441c1521039", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1fcd2b6b381102e7d7dd1313e5f4d0a41daad0258ba095e2acaad441c1521039", kill_on_drop: false }` [INFO] [stdout] 1fcd2b6b381102e7d7dd1313e5f4d0a41daad0258ba095e2acaad441c1521039 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+430feb24a46993e5073c1bb1b39da190d83fa2bf" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 36d4ef674a44cb22014f3f5fd7e7ef0c69a3b2c854e419e4ed0e7621334b15d0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "36d4ef674a44cb22014f3f5fd7e7ef0c69a3b2c854e419e4ed0e7621334b15d0", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling unindent v0.1.6 [INFO] [stderr] Compiling pyo3 v0.12.1 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Checking instant v0.1.7 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Checking lock_api v0.4.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking getrandom v0.1.15 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.11.0 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rayon-core v1.8.1 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.1.13 [INFO] [stderr] Checking serde_json v1.0.57 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.1 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.15 [INFO] [stderr] Compiling inventory-impl v0.1.9 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling pyo3cls v0.12.1 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Checking inventory v0.1.9 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-1e802f6483b51fe6/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-6753884cb1f3058b/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-6753884cb1f3058b/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x563cd18f7b20 - std::backtrace_rs::backtrace::libunwind::trace::h448c56741b6011d3 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x563cd18f7b20 - std::backtrace_rs::backtrace::trace_unsynchronized::h881b9d30a8a89a0c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x563cd18f7b20 - std::sys_common::backtrace::_print_fmt::h720a2f61f75b9f58 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x563cd18f7b20 - ::fmt::h8d62bbfda6d5c836 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x563cd191d1ec - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/fmt/mod.rs:1076:17 [INFO] [stderr] 5: 0x563cd18f3f22 - std::io::Write::write_fmt::h16a9fe7680ac245c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x563cd18fa415 - std::sys_common::backtrace::_print::h9ba51a6db618de7d [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x563cd18fa415 - std::sys_common::backtrace::print::h5f20e41c85e91716 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x563cd18fa415 - std::panicking::default_hook::{{closure}}::h8d48653392f3b04c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x563cd18fa0b8 - std::panicking::default_hook::hb3948d1f74b6ff4c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x563cd18fabb1 - std::panicking::rust_panic_with_hook::h55d23fef0ad751bc [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x563cd1880dbe - std::panicking::begin_panic::{{closure}}::h3173db7940123010 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:522:9 [INFO] [stderr] 12: 0x563cd1880569 - std::sys_common::backtrace::__rust_end_short_backtrace::h7d311a04a0d33a8c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x563cd1880ceb - std::panicking::begin_panic::hbabaa2f90177f933 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:521:12 [INFO] [stderr] 14: 0x563cd13319c1 - build_script_build::build_own_htslib::hd83260ae0b7a311c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] 15: 0x563cd1331e94 - build_script_build::main::hb633a9b6c736330d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66:9 [INFO] [stderr] 16: 0x563cd1332d8b - core::ops::function::FnOnce::call_once::h86ffa4a6a93e5873 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x563cd1332c2e - std::sys_common::backtrace::__rust_begin_short_backtrace::hef6dda4e54529cf3 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x563cd13333a1 - std::rt::lang_start::{{closure}}::hc74113e86b14658e [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x563cd18fb0c7 - core::ops::function::impls:: for &F>::call_once::h3f3ba5d1e0ce8d49 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x563cd18fb0c7 - std::panicking::try::do_call::hd7a374fc87b951e7 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x563cd18fb0c7 - std::panicking::try::hcc68eba0f7d51b82 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x563cd18fb0c7 - std::panic::catch_unwind::h2e8cfcfcf4f9eb6d [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/panic.rs:382:14 [INFO] [stderr] 23: 0x563cd18fb0c7 - std::rt::lang_start_internal::h8ff82302dd620b52 [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x563cd1333377 - std::rt::lang_start::h42f4eb1231fe175c [INFO] [stderr] at /rustc/430feb24a46993e5073c1bb1b39da190d83fa2bf/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x563cd13324ca - main [INFO] [stderr] 26: 0x7fd52d4f20b3 - __libc_start_main [INFO] [stderr] 27: 0x563cd13310be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "36d4ef674a44cb22014f3f5fd7e7ef0c69a3b2c854e419e4ed0e7621334b15d0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "36d4ef674a44cb22014f3f5fd7e7ef0c69a3b2c854e419e4ed0e7621334b15d0", kill_on_drop: false }` [INFO] [stdout] 36d4ef674a44cb22014f3f5fd7e7ef0c69a3b2c854e419e4ed0e7621334b15d0