[INFO] fetching crate flann-sys 0.1.0... [INFO] checking flann-sys-0.1.0 against try#ff044a3d65d25a17c3e14c1530004e1540179ba7 for pr-78338 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain ff044a3d65d25a17c3e14c1530004e1540179ba7 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ff044a3d65d25a17c3e14c1530004e1540179ba7" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ff044a3d65d25a17c3e14c1530004e1540179ba7" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ff044a3d65d25a17c3e14c1530004e1540179ba7" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ff044a3d65d25a17c3e14c1530004e1540179ba7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8538dc26d8585fa75258fda62a9232a4332275557011f1c12eab5d2ae19d5a8b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8538dc26d8585fa75258fda62a9232a4332275557011f1c12eab5d2ae19d5a8b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8538dc26d8585fa75258fda62a9232a4332275557011f1c12eab5d2ae19d5a8b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8538dc26d8585fa75258fda62a9232a4332275557011f1c12eab5d2ae19d5a8b", kill_on_drop: false }` [INFO] [stdout] 8538dc26d8585fa75258fda62a9232a4332275557011f1c12eab5d2ae19d5a8b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ff044a3d65d25a17c3e14c1530004e1540179ba7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] aa5bb2cf3a334a3c630032454901d9520bbd25dd5bc78422f96ba9fe9ab8cc63 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "aa5bb2cf3a334a3c630032454901d9520bbd25dd5bc78422f96ba9fe9ab8cc63", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-95df254182ed8768/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-b12700f79c988811/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-b12700f79c988811/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-b12700f79c988811/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55f264d84aa0 - std::backtrace_rs::backtrace::libunwind::trace::h303a626d53553a64 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55f264d84aa0 - std::backtrace_rs::backtrace::trace_unsynchronized::h6abb882733c3f18c [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55f264d84aa0 - std::sys_common::backtrace::_print_fmt::h57829321f1d9217a [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55f264d84aa0 - ::fmt::h400b66a054640aac [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55f264daaecc - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/core/src/fmt/mod.rs:1076:17 [INFO] [stderr] 5: 0x55f264d80982 - std::io::Write::write_fmt::h6453b28c8b27c6ea [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x55f264d87605 - std::sys_common::backtrace::_print::h15cc4b3923cc9bc0 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55f264d87605 - std::sys_common::backtrace::print::h953c7be178c0674d [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55f264d87605 - std::panicking::default_hook::{{closure}}::h635d667f571198f0 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55f264d872a8 - std::panicking::default_hook::h3bc2efb48060abaa [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55f264d87ce1 - std::panicking::rust_panic_with_hook::h887eb0c89f46b8b2 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/panicking.rs:577:17 [INFO] [stderr] 11: 0x55f264d87889 - std::panicking::begin_panic_handler::{{closure}}::hf0d3f46d37dd3bc1 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/panicking.rs:484:9 [INFO] [stderr] 12: 0x55f264d84f3c - std::sys_common::backtrace::__rust_end_short_backtrace::h4bce8b52717576e3 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55f264d87849 - rust_begin_unwind [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/panicking.rs:483:5 [INFO] [stderr] 14: 0x55f264d877fb - std::panicking::begin_panic_fmt::h53297a84a5b19714 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/panicking.rs:437:5 [INFO] [stderr] 15: 0x55f264860354 - cmake::fail::h054aa1905db0279d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] 16: 0x55f26485fcc7 - cmake::run::h668d9a0c8aaf6787 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863:9 [INFO] [stderr] 17: 0x55f26485b71c - cmake::Config::build::he1a77727a80a283b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698:13 [INFO] [stderr] 18: 0x55f2648563ef - build_script_build::main::h2b285245febe5ee6 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30:19 [INFO] [stderr] 19: 0x55f264856e9b - core::ops::function::FnOnce::call_once::h39d4ca8f6596a5f9 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x55f264856d0e - std::sys_common::backtrace::__rust_begin_short_backtrace::hfdfd1d13c7d68ca9 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 21: 0x55f264858a81 - std::rt::lang_start::{{closure}}::hd64a0545931fedb3 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/rt.rs:66:18 [INFO] [stderr] 22: 0x55f264d88107 - core::ops::function::impls:: for &F>::call_once::h1af42f2aaad601f7 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55f264d88107 - std::panicking::try::do_call::h9d43a73a8e9fb04a [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/panicking.rs:381:40 [INFO] [stderr] 24: 0x55f264d88107 - std::panicking::try::h7a8d1100a6afe839 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/panicking.rs:345:19 [INFO] [stderr] 25: 0x55f264d88107 - std::panic::catch_unwind::h9c80942da690cf03 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/panic.rs:382:14 [INFO] [stderr] 26: 0x55f264d88107 - std::rt::lang_start_internal::h18ef240fb861b4d5 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x55f264858a57 - std::rt::lang_start::h628801b79dcfe479 [INFO] [stderr] at /rustc/ff044a3d65d25a17c3e14c1530004e1540179ba7/library/std/src/rt.rs:65:5 [INFO] [stderr] 28: 0x55f26485683a - main [INFO] [stderr] 29: 0x7faae3dfb0b3 - __libc_start_main [INFO] [stderr] 30: 0x55f2648560ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "aa5bb2cf3a334a3c630032454901d9520bbd25dd5bc78422f96ba9fe9ab8cc63", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aa5bb2cf3a334a3c630032454901d9520bbd25dd5bc78422f96ba9fe9ab8cc63", kill_on_drop: false }` [INFO] [stdout] aa5bb2cf3a334a3c630032454901d9520bbd25dd5bc78422f96ba9fe9ab8cc63