[INFO] cloning repository https://github.com/bluenote-1577/haplotype_phaser [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bluenote-1577/haplotype_phaser" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fhaplotype_phaser", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fhaplotype_phaser'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] e9f68de97dd8b0bccdacfa5a163ef4fcc5dfbeba [INFO] checking bluenote-1577/haplotype_phaser against try#ff044a3d65d25a17c3e14c1530004e1540179ba7 for pr-78338 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fhaplotype_phaser" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/bluenote-1577/haplotype_phaser on toolchain ff044a3d65d25a17c3e14c1530004e1540179ba7 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ff044a3d65d25a17c3e14c1530004e1540179ba7" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/bluenote-1577/haplotype_phaser [INFO] finished tweaking git repo https://github.com/bluenote-1577/haplotype_phaser [INFO] tweaked toml for git repo https://github.com/bluenote-1577/haplotype_phaser written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/bluenote-1577/haplotype_phaser already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ff044a3d65d25a17c3e14c1530004e1540179ba7" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded bio-types v0.7.0 [INFO] [stderr] Downloaded permute v0.1.0 [INFO] [stderr] Downloaded statrs v0.13.0 [INFO] [stderr] Downloaded bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Downloaded hts-sys v1.10.3 [INFO] [stderr] Downloaded libz-sys v1.1.0 [INFO] [stderr] Downloaded curl-sys v0.4.36+curl-7.71.1 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded rust-htslib v0.32.0 [INFO] [stderr] Downloaded lzma-sys v0.1.16 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ff044a3d65d25a17c3e14c1530004e1540179ba7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 9c2ae430f3e6d8a168c138205d9a02455a7a889289a99a29086ef81abfc74300 [INFO] running `Command { std: "docker" "start" "-a" "9c2ae430f3e6d8a168c138205d9a02455a7a889289a99a29086ef81abfc74300", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9c2ae430f3e6d8a168c138205d9a02455a7a889289a99a29086ef81abfc74300", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9c2ae430f3e6d8a168c138205d9a02455a7a889289a99a29086ef81abfc74300", kill_on_drop: false }` [INFO] [stdout] 9c2ae430f3e6d8a168c138205d9a02455a7a889289a99a29086ef81abfc74300 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ff044a3d65d25a17c3e14c1530004e1540179ba7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f4c3cd41ba18eaf2ceefd1bf9254d18663113400bc52f915d6b4237adcdd608f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f4c3cd41ba18eaf2ceefd1bf9254d18663113400bc52f915d6b4237adcdd608f", kill_on_drop: false }` [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.38 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Checking matches v0.1.8 [INFO] [stderr] Checking tinyvec v0.3.4 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling rayon-core v1.7.1 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking regex-syntax v0.6.18 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking percent-encoding v2.1.0 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking either v1.6.0 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking permute v0.1.0 [INFO] [stderr] Compiling libc v0.2.74 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling rayon v1.3.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling standback v0.2.9 [INFO] [stderr] Compiling time v0.2.16 [INFO] [stderr] Compiling typenum v1.12.0 [INFO] [stderr] Compiling serde v1.0.115 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking unicode-normalization v0.1.13 [INFO] [stderr] Checking aho-corasick v0.7.13 [INFO] [stderr] Checking crossbeam-queue v0.2.3 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Checking generic-array v0.13.2 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Compiling openssl-src v111.10.2+1.1.1g [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Checking alga v0.9.3 [INFO] [stderr] Compiling openssl-sys v0.9.58 [INFO] [stderr] Compiling libz-sys v1.1.0 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.36+curl-7.71.1 [INFO] [stderr] Compiling hts-sys v1.10.3 [INFO] [stderr] Checking rand_distr v0.2.2 [INFO] [stderr] Checking nalgebra v0.19.0 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling serde_derive v1.0.115 [INFO] [stderr] Compiling time-macros-impl v0.1.1 [INFO] [stderr] Checking time-macros v0.1.0 [INFO] [stderr] Checking thiserror v1.0.20 [INFO] [stderr] Checking bio-types v0.7.0 [INFO] [stderr] Checking statrs v0.13.0 [INFO] [stderr] Checking rust-htslib v0.32.0 [INFO] [stderr] Checking flopp v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `Binomial` [INFO] [stdout] --> src/local_clustering.rs:5:28 [INFO] [stdout] | [INFO] [stdout] 5 | use statrs::distribution::{Binomial, ChiSquared, Univariate}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Binomial` [INFO] [stdout] --> src/local_clustering.rs:5:28 [INFO] [stdout] | [INFO] [stdout] 5 | use statrs::distribution::{Binomial, ChiSquared, Univariate}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `header` [INFO] [stdout] --> src/file_reader.rs:163:9 [INFO] [stdout] | [INFO] [stdout] 163 | let header = vcf.header(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_header` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `div_factor` [INFO] [stdout] --> src/local_clustering.rs:711:51 [INFO] [stdout] | [INFO] [stdout] 711 | pub fn norm_approx(n : usize, k : usize, p : f64, div_factor : f64) -> f64{ [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_div_factor` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/file_reader.rs:164:9 [INFO] [stdout] | [INFO] [stdout] 164 | let mut previous_pos = -1; [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `header` [INFO] [stdout] --> src/file_reader.rs:163:9 [INFO] [stdout] | [INFO] [stdout] 163 | let header = vcf.header(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_header` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `div_factor` [INFO] [stdout] --> src/local_clustering.rs:711:51 [INFO] [stdout] | [INFO] [stdout] 711 | pub fn norm_approx(n : usize, k : usize, p : f64, div_factor : f64) -> f64{ [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_div_factor` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/file_reader.rs:164:9 [INFO] [stdout] | [INFO] [stdout] 164 | let mut previous_pos = -1; [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `populate_clusters2_binom` [INFO] [stdout] --> src/local_clustering.rs:388:4 [INFO] [stdout] | [INFO] [stdout] 388 | fn populate_clusters2_binom( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `populate_clusters1` [INFO] [stdout] --> src/local_clustering.rs:489:4 [INFO] [stdout] | [INFO] [stdout] 489 | fn populate_clusters1( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `get_best_perms_mec` [INFO] [stdout] --> src/vcf_polishing.rs:118:4 [INFO] [stdout] | [INFO] [stdout] 118 | fn get_best_perms_mec(part1: &Vec>, part2: &Vec>) -> Vec> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `get_mec_from_part` [INFO] [stdout] --> src/vcf_polishing.rs:246:4 [INFO] [stdout] | [INFO] [stdout] 246 | fn get_mec_from_part(part : &Vec>) -> i32{ [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `populate_clusters2_binom` [INFO] [stdout] --> src/local_clustering.rs:388:4 [INFO] [stdout] | [INFO] [stdout] 388 | fn populate_clusters2_binom( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `populate_clusters1` [INFO] [stdout] --> src/local_clustering.rs:489:4 [INFO] [stdout] | [INFO] [stdout] 489 | fn populate_clusters1( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `get_best_perms_mec` [INFO] [stdout] --> src/vcf_polishing.rs:118:4 [INFO] [stdout] | [INFO] [stdout] 118 | fn get_best_perms_mec(part1: &Vec>, part2: &Vec>) -> Vec> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `get_mec_from_part` [INFO] [stdout] --> src/vcf_polishing.rs:246:4 [INFO] [stdout] | [INFO] [stdout] 246 | fn get_mec_from_part(part : &Vec>) -> i32{ [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FxHashMap` [INFO] [stdout] --> tests/frag_reader_test.rs:5:24 [INFO] [stdout] | [INFO] [stdout] 5 | use fxhash::{FxHashSet,FxHashMap}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `HashSet` [INFO] [stdout] --> tests/frag_reader_test.rs:6:24 [INFO] [stdout] | [INFO] [stdout] 6 | use std::collections::{HashSet,BTreeMap}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> tests/frag_reader_test.rs:80:48 [INFO] [stdout] | [INFO] [stdout] 80 | let mut hashset_int = FxHashSet::default();; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> src/bin/flopp.rs:330:5 [INFO] [stdout] | [INFO] [stdout] 330 | ///TEST SECTION [INFO] [stdout] | ^^^^^^^^^^^^^^^ rustdoc does not generate documentation for macro invocations [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stdout] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> src/bin/flopp.rs:344:5 [INFO] [stdout] | [INFO] [stdout] 344 | /// [INFO] [stdout] | ^^^ rustdoc does not generate documentation for macro invocations [INFO] [stdout] | [INFO] [stdout] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> src/bin/flopp.rs:330:5 [INFO] [stdout] | [INFO] [stdout] 330 | ///TEST SECTION [INFO] [stdout] | ^^^^^^^^^^^^^^^ rustdoc does not generate documentation for macro invocations [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stdout] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> src/bin/flopp.rs:344:5 [INFO] [stdout] | [INFO] [stdout] 344 | /// [INFO] [stdout] | ^^^ rustdoc does not generate documentation for macro invocations [INFO] [stdout] | [INFO] [stdout] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `range` is assigned to, but never used [INFO] [stdout] --> src/bin/flopp.rs:113:9 [INFO] [stdout] | [INFO] [stdout] 113 | let range; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] = note: consider using `_range` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `range_string` [INFO] [stdout] --> src/bin/flopp.rs:114:9 [INFO] [stdout] | [INFO] [stdout] 114 | let range_string = match matches.value_of("range") { [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_range_string` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `range` is never read [INFO] [stdout] --> src/bin/flopp.rs:116:13 [INFO] [stdout] | [INFO] [stdout] 116 | range = false; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `range` is never read [INFO] [stdout] --> src/bin/flopp.rs:120:13 [INFO] [stdout] | [INFO] [stdout] 120 | range = true; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `indexed_reads` [INFO] [stdout] --> tests/frag_reader_test.rs:47:9 [INFO] [stdout] | [INFO] [stdout] 47 | let indexed_reads = utils_frags::get_all_overlaps(&frags); [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_indexed_reads` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `range` is assigned to, but never used [INFO] [stdout] --> src/bin/flopp.rs:113:9 [INFO] [stdout] | [INFO] [stdout] 113 | let range; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] = note: consider using `_range` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `range_string` [INFO] [stdout] --> src/bin/flopp.rs:114:9 [INFO] [stdout] | [INFO] [stdout] 114 | let range_string = match matches.value_of("range") { [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_range_string` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `range` is never read [INFO] [stdout] --> src/bin/flopp.rs:116:13 [INFO] [stdout] | [INFO] [stdout] 116 | range = false; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `range` is never read [INFO] [stdout] --> src/bin/flopp.rs:120:13 [INFO] [stdout] | [INFO] [stdout] 120 | range = true; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/flopp.rs:308:9 [INFO] [stdout] | [INFO] [stdout] 308 | let mut final_part = vcf_polishing::link_blocks_greedy(&part_filled); [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/flopp.rs:308:9 [INFO] [stdout] | [INFO] [stdout] 308 | let mut final_part = vcf_polishing::link_blocks_greedy(&part_filled); [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 7 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 7 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [optimized + debuginfo] target(s) in 4m 01s [INFO] running `Command { std: "docker" "inspect" "f4c3cd41ba18eaf2ceefd1bf9254d18663113400bc52f915d6b4237adcdd608f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f4c3cd41ba18eaf2ceefd1bf9254d18663113400bc52f915d6b4237adcdd608f", kill_on_drop: false }` [INFO] [stdout] f4c3cd41ba18eaf2ceefd1bf9254d18663113400bc52f915d6b4237adcdd608f