[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against master#ffa2e7ae8fbf9badc035740db949b9dae271c29f for pr-78338 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-14/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain ffa2e7ae8fbf9badc035740db949b9dae271c29f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-14/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 73dc46179f2719db508da130f486f306cdf7096ef414fe7a491fa22f423e86b3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "73dc46179f2719db508da130f486f306cdf7096ef414fe7a491fa22f423e86b3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "73dc46179f2719db508da130f486f306cdf7096ef414fe7a491fa22f423e86b3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "73dc46179f2719db508da130f486f306cdf7096ef414fe7a491fa22f423e86b3", kill_on_drop: false }` [INFO] [stdout] 73dc46179f2719db508da130f486f306cdf7096ef414fe7a491fa22f423e86b3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cb68f70c1599d1d7c8e5487b57d9937622fb6fac20ddf3cdb6fa8f12aa048c1d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cb68f70c1599d1d7c8e5487b57d9937622fb6fac20ddf3cdb6fa8f12aa048c1d", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-b26de29e099dd1b0/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-bca8878d548441e7/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-bca8878d548441e7/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5563854b3d70 - std::backtrace_rs::backtrace::libunwind::trace::h303a626d53553a64 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x5563854b3d70 - std::backtrace_rs::backtrace::trace_unsynchronized::h6abb882733c3f18c [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5563854b3d70 - std::sys_common::backtrace::_print_fmt::h57829321f1d9217a [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5563854b3d70 - ::fmt::h400b66a054640aac [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5563854d39ac - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/core/src/fmt/mod.rs:1076:17 [INFO] [stderr] 5: 0x5563854b0162 - std::io::Write::write_fmt::h6453b28c8b27c6ea [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x5563854b66f5 - std::sys_common::backtrace::_print::h15cc4b3923cc9bc0 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5563854b66f5 - std::sys_common::backtrace::print::h953c7be178c0674d [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5563854b66f5 - std::panicking::default_hook::{{closure}}::h635d667f571198f0 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5563854b6398 - std::panicking::default_hook::h3bc2efb48060abaa [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x5563854b6dd1 - std::panicking::rust_panic_with_hook::h887eb0c89f46b8b2 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:577:17 [INFO] [stderr] 11: 0x5563854b6979 - std::panicking::begin_panic_handler::{{closure}}::hf0d3f46d37dd3bc1 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:484:9 [INFO] [stderr] 12: 0x5563854b420c - std::sys_common::backtrace::__rust_end_short_backtrace::h4bce8b52717576e3 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5563854b6939 - rust_begin_unwind [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:483:5 [INFO] [stderr] 14: 0x5563854b68eb - std::panicking::begin_panic_fmt::h53297a84a5b19714 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:437:5 [INFO] [stderr] 15: 0x55638544a70e - cmake::fail::ha9854c3a28aebbb8 [INFO] [stderr] 16: 0x55638544a08c - cmake::run::hb52cd8ce2b4f2a3e [INFO] [stderr] 17: 0x556385445d9b - cmake::Config::build::hd7e9f5c5ed99e1b1 [INFO] [stderr] 18: 0x5563854409ec - build_script_build::main::h8195388fbf7fcfb1 [INFO] [stderr] 19: 0x556385441373 - core::ops::function::FnOnce::call_once::h59e603949dfc9bdc [INFO] [stderr] 20: 0x556385441319 - std::sys_common::backtrace::__rust_begin_short_backtrace::hf2d1ab934c8febab [INFO] [stderr] 21: 0x556385442f19 - std::rt::lang_start::{{closure}}::h4210c713e82bb1f7 [INFO] [stderr] 22: 0x5563854b71f7 - core::ops::function::impls:: for &F>::call_once::h1af42f2aaad601f7 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x5563854b71f7 - std::panicking::try::do_call::h9d43a73a8e9fb04a [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:381:40 [INFO] [stderr] 24: 0x5563854b71f7 - std::panicking::try::h7a8d1100a6afe839 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:345:19 [INFO] [stderr] 25: 0x5563854b71f7 - std::panic::catch_unwind::h9c80942da690cf03 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panic.rs:382:14 [INFO] [stderr] 26: 0x5563854b71f7 - std::rt::lang_start_internal::h18ef240fb861b4d5 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x556385442ef8 - std::rt::lang_start::ha05ec6d586e688a3 [INFO] [stderr] 28: 0x556385440bab - main [INFO] [stderr] 29: 0x7f54e98330b3 - __libc_start_main [INFO] [stderr] 30: 0x55638543d0ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "cb68f70c1599d1d7c8e5487b57d9937622fb6fac20ddf3cdb6fa8f12aa048c1d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cb68f70c1599d1d7c8e5487b57d9937622fb6fac20ddf3cdb6fa8f12aa048c1d", kill_on_drop: false }` [INFO] [stdout] cb68f70c1599d1d7c8e5487b57d9937622fb6fac20ddf3cdb6fa8f12aa048c1d