[INFO] fetching crate d4utils 0.1.13... [INFO] checking d4utils-0.1.13 against master#ffa2e7ae8fbf9badc035740db949b9dae271c29f for pr-78338 [INFO] extracting crate d4utils 0.1.13 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate d4utils 0.1.13 on toolchain ffa2e7ae8fbf9badc035740db949b9dae271c29f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4utils 0.1.13 [INFO] finished tweaking crates.io crate d4utils 0.1.13 [INFO] tweaked toml for crates.io crate d4utils 0.1.13 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate d4utils 0.1.13 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded d4-framefile v0.1.13 [INFO] [stderr] Downloaded d4-hts v0.1.13 [INFO] [stderr] Downloaded cpuprofiler v0.0.4 [INFO] [stderr] Downloaded d4 v0.1.13 [INFO] [stderr] Downloaded d4-bigwig v0.1.13 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c54c01a67060216eb2ed1222a8a936e1f5e40b0334e10b3032b0cbc5ee553b95 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c54c01a67060216eb2ed1222a8a936e1f5e40b0334e10b3032b0cbc5ee553b95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c54c01a67060216eb2ed1222a8a936e1f5e40b0334e10b3032b0cbc5ee553b95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c54c01a67060216eb2ed1222a8a936e1f5e40b0334e10b3032b0cbc5ee553b95", kill_on_drop: false }` [INFO] [stdout] c54c01a67060216eb2ed1222a8a936e1f5e40b0334e10b3032b0cbc5ee553b95 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b8bdfd269580d085cdc6b63e34348630a2ac530ed482ef3db639421710134849 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b8bdfd269580d085cdc6b63e34348630a2ac530ed482ef3db639421710134849", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.6.20 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling const_fn v0.4.2 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling serde v1.0.117 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling syn v1.0.46 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Compiling serde_json v1.0.59 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking termcolor v1.1.0 [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling clang-sys v1.0.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.0 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling aho-corasick v0.7.14 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking getrandom v0.1.15 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking flate2 v1.0.18 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-epoch v0.9.0 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking regex v1.4.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.1.13 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] Compiling d4-bigwig v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-b887d05e142c6612/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-b8f9ded4200bc66d/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-b8f9ded4200bc66d/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a85d41ad00 - std::backtrace_rs::backtrace::libunwind::trace::h303a626d53553a64 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55a85d41ad00 - std::backtrace_rs::backtrace::trace_unsynchronized::h6abb882733c3f18c [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55a85d41ad00 - std::sys_common::backtrace::_print_fmt::h57829321f1d9217a [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55a85d41ad00 - ::fmt::h400b66a054640aac [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55a85d44032c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/core/src/fmt/mod.rs:1076:17 [INFO] [stderr] 5: 0x55a85d4170c2 - std::io::Write::write_fmt::h6453b28c8b27c6ea [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x55a85d41d5f5 - std::sys_common::backtrace::_print::h15cc4b3923cc9bc0 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55a85d41d5f5 - std::sys_common::backtrace::print::h953c7be178c0674d [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55a85d41d5f5 - std::panicking::default_hook::{{closure}}::h635d667f571198f0 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55a85d41d298 - std::panicking::default_hook::h3bc2efb48060abaa [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55a85d41dcd1 - std::panicking::rust_panic_with_hook::h887eb0c89f46b8b2 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:577:17 [INFO] [stderr] 11: 0x55a85d1bacae - std::panicking::begin_panic::{{closure}}::h7bffa97f4fb10662 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:506:9 [INFO] [stderr] 12: 0x55a85d18d309 - std::sys_common::backtrace::__rust_end_short_backtrace::h96ad22cd95882a74 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55a85d1babdb - std::panicking::begin_panic::h426203c0120b49d5 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:505:12 [INFO] [stderr] 14: 0x55a85ce599c1 - build_script_build::build_own_htslib::h64ad396003175ee0 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] 15: 0x55a85ce59e94 - build_script_build::main::h0ab3211ca04431a1 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66:9 [INFO] [stderr] 16: 0x55a85ce5b40b - core::ops::function::FnOnce::call_once::h11a6935ca300235e [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55a85ce5ac2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h47958a9640b8990f [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55a85ce5b241 - std::rt::lang_start::{{closure}}::heb86ca30b8949436 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55a85d41e1e7 - core::ops::function::impls:: for &F>::call_once::h1af42f2aaad601f7 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55a85d41e1e7 - std::panicking::try::do_call::h9d43a73a8e9fb04a [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x55a85d41e1e7 - std::panicking::try::h7a8d1100a6afe839 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x55a85d41e1e7 - std::panic::catch_unwind::h9c80942da690cf03 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panic.rs:382:14 [INFO] [stderr] 23: 0x55a85d41e1e7 - std::rt::lang_start_internal::h18ef240fb861b4d5 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55a85ce5b217 - std::rt::lang_start::hd6166bd21501d9ed [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55a85ce5a4ca - main [INFO] [stderr] 26: 0x7f9ff4abc0b3 - __libc_start_main [INFO] [stderr] 27: 0x55a85ce590be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "b8bdfd269580d085cdc6b63e34348630a2ac530ed482ef3db639421710134849", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b8bdfd269580d085cdc6b63e34348630a2ac530ed482ef3db639421710134849", kill_on_drop: false }` [INFO] [stdout] b8bdfd269580d085cdc6b63e34348630a2ac530ed482ef3db639421710134849