[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 429cbc0738adfaabcc5d617513bd99f1c9495495 [INFO] checking 38/pyd4 against master#ffa2e7ae8fbf9badc035740db949b9dae271c29f for pr-78338 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain ffa2e7ae8fbf9badc035740db949b9dae271c29f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 7329b13b472fe88a31f9cfbc621b4d0a61401fa8d278e5e1bdf00a13aa17e234 [INFO] running `Command { std: "docker" "start" "-a" "7329b13b472fe88a31f9cfbc621b4d0a61401fa8d278e5e1bdf00a13aa17e234", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7329b13b472fe88a31f9cfbc621b4d0a61401fa8d278e5e1bdf00a13aa17e234", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7329b13b472fe88a31f9cfbc621b4d0a61401fa8d278e5e1bdf00a13aa17e234", kill_on_drop: false }` [INFO] [stdout] 7329b13b472fe88a31f9cfbc621b4d0a61401fa8d278e5e1bdf00a13aa17e234 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+ffa2e7ae8fbf9badc035740db949b9dae271c29f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d0cfd65b24ecf06658e8bcb58176b032b6249faa97d0c528aab459fce350dc57 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d0cfd65b24ecf06658e8bcb58176b032b6249faa97d0c528aab459fce350dc57", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling proc-macro-hack v0.5.18 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling unindent v0.1.6 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Checking smallvec v1.4.2 [INFO] [stderr] Compiling inventory v0.1.9 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling pyo3 v0.12.1 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Checking instant v0.1.7 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking lock_api v0.4.1 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Checking serde_json v1.0.57 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.11.0 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking d4-framefile v0.1.13 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.1 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling inventory-impl v0.1.9 [INFO] [stderr] Compiling ctor v0.1.15 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling pyo3cls v0.12.1 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-1e802f6483b51fe6/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-6753884cb1f3058b/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-6753884cb1f3058b/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x556a2f8d0b00 - std::backtrace_rs::backtrace::libunwind::trace::h303a626d53553a64 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x556a2f8d0b00 - std::backtrace_rs::backtrace::trace_unsynchronized::h6abb882733c3f18c [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x556a2f8d0b00 - std::sys_common::backtrace::_print_fmt::h57829321f1d9217a [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x556a2f8d0b00 - ::fmt::h400b66a054640aac [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x556a2f8f612c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/core/src/fmt/mod.rs:1076:17 [INFO] [stderr] 5: 0x556a2f8ccec2 - std::io::Write::write_fmt::h6453b28c8b27c6ea [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/io/mod.rs:1516:15 [INFO] [stderr] 6: 0x556a2f8d33f5 - std::sys_common::backtrace::_print::h15cc4b3923cc9bc0 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x556a2f8d33f5 - std::sys_common::backtrace::print::h953c7be178c0674d [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x556a2f8d33f5 - std::panicking::default_hook::{{closure}}::h635d667f571198f0 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x556a2f8d3098 - std::panicking::default_hook::h3bc2efb48060abaa [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x556a2f8d3ad1 - std::panicking::rust_panic_with_hook::h887eb0c89f46b8b2 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:577:17 [INFO] [stderr] 11: 0x556a2f859d8e - std::panicking::begin_panic::{{closure}}::hfad296a7f60be9d6 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:506:9 [INFO] [stderr] 12: 0x556a2f859509 - std::sys_common::backtrace::__rust_end_short_backtrace::h3227e5b35c26fd83 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x556a2f859cbb - std::panicking::begin_panic::h96207e20ea8e25c9 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:505:12 [INFO] [stderr] 14: 0x556a2f30a9c1 - build_script_build::build_own_htslib::hf4b643b86079a7de [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] 15: 0x556a2f30ae94 - build_script_build::main::h3294dd45c7653909 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66:9 [INFO] [stderr] 16: 0x556a2f30c40b - core::ops::function::FnOnce::call_once::hcf0e87b13377c425 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x556a2f30bc2e - std::sys_common::backtrace::__rust_begin_short_backtrace::hf283c5c285116fc0 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x556a2f30c241 - std::rt::lang_start::{{closure}}::h228b8140d1e11844 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x556a2f8d3fe7 - core::ops::function::impls:: for &F>::call_once::h1af42f2aaad601f7 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x556a2f8d3fe7 - std::panicking::try::do_call::h9d43a73a8e9fb04a [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x556a2f8d3fe7 - std::panicking::try::h7a8d1100a6afe839 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x556a2f8d3fe7 - std::panic::catch_unwind::h9c80942da690cf03 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/panic.rs:382:14 [INFO] [stderr] 23: 0x556a2f8d3fe7 - std::rt::lang_start_internal::h18ef240fb861b4d5 [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x556a2f30c217 - std::rt::lang_start::h120ac2fbc83518cf [INFO] [stderr] at /rustc/ffa2e7ae8fbf9badc035740db949b9dae271c29f/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x556a2f30b4ca - main [INFO] [stderr] 26: 0x7fe55e59e0b3 - __libc_start_main [INFO] [stderr] 27: 0x556a2f30a0be - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "d0cfd65b24ecf06658e8bcb58176b032b6249faa97d0c528aab459fce350dc57", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d0cfd65b24ecf06658e8bcb58176b032b6249faa97d0c528aab459fce350dc57", kill_on_drop: false }` [INFO] [stdout] d0cfd65b24ecf06658e8bcb58176b032b6249faa97d0c528aab459fce350dc57