[INFO] cloning repository https://github.com/mttmartin/anneal_predictor [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mttmartin/anneal_predictor" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8015bc6eaafedea32d296c1982070e2073c44112 [INFO] checking mttmartin/anneal_predictor against try#f47dd4da3ae8c32c9e65d307bfe640b143e674df for pr-77526 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mttmartin/anneal_predictor on toolchain f47dd4da3ae8c32c9e65d307bfe640b143e674df [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] finished tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] tweaked toml for git repo https://github.com/mttmartin/anneal_predictor written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/mttmartin/anneal_predictor already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f4dc97ab9523e822ab90643775fc2c7399a9a1304887a43d063e671012dbcdbb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f4dc97ab9523e822ab90643775fc2c7399a9a1304887a43d063e671012dbcdbb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f4dc97ab9523e822ab90643775fc2c7399a9a1304887a43d063e671012dbcdbb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f4dc97ab9523e822ab90643775fc2c7399a9a1304887a43d063e671012dbcdbb", kill_on_drop: false }` [INFO] [stdout] f4dc97ab9523e822ab90643775fc2c7399a9a1304887a43d063e671012dbcdbb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 41b177669f0fd8b71ba671b41cf24f5af00df206694545a5bb39756aa1f1d1e8 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "41b177669f0fd8b71ba671b41cf24f5af00df206694545a5bb39756aa1f1d1e8", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Checking anneal_predictor v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:306:7 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | let mut deltaS = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:10:11 [INFO] [stdout] | [INFO] [stdout] 10 | let mut deltaH = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:278:7 [INFO] [stdout] | [INFO] [stdout] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:282:4 [INFO] [stdout] | [INFO] [stdout] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:284:7 [INFO] [stdout] | [INFO] [stdout] 284 | let deltaH = 9.62; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:285:7 [INFO] [stdout] | [INFO] [stdout] 285 | let deltaS = 17.15/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:286:7 [INFO] [stdout] | [INFO] [stdout] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:289:7 [INFO] [stdout] | [INFO] [stdout] 289 | let deltaH = 0.4184; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:290:7 [INFO] [stdout] | [INFO] [stdout] 290 | let deltaS = -11.72/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:291:7 [INFO] [stdout] | [INFO] [stdout] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `calc_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:299:4 [INFO] [stdout] | [INFO] [stdout] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:300:10 [INFO] [stdout] | [INFO] [stdout] 300 | let mut deltaG = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:303:11 [INFO] [stdout] | [INFO] [stdout] 303 | let mut initiation_deltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:306:11 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `lowest_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:321:11 [INFO] [stdout] | [INFO] [stdout] 321 | let mut lowestDeltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `currentDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:324:8 [INFO] [stdout] | [INFO] [stdout] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:339:6 [INFO] [stdout] | [INFO] [stdout] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:354:7 [INFO] [stdout] | [INFO] [stdout] 354 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 21 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:306:7 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | let mut deltaS = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:10:11 [INFO] [stdout] | [INFO] [stdout] 10 | let mut deltaH = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:278:7 [INFO] [stdout] | [INFO] [stdout] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:282:4 [INFO] [stdout] | [INFO] [stdout] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:284:7 [INFO] [stdout] | [INFO] [stdout] 284 | let deltaH = 9.62; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:285:7 [INFO] [stdout] | [INFO] [stdout] 285 | let deltaS = 17.15/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:286:7 [INFO] [stdout] | [INFO] [stdout] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:289:7 [INFO] [stdout] | [INFO] [stdout] 289 | let deltaH = 0.4184; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:290:7 [INFO] [stdout] | [INFO] [stdout] 290 | let deltaS = -11.72/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:291:7 [INFO] [stdout] | [INFO] [stdout] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `calc_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:299:4 [INFO] [stdout] | [INFO] [stdout] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:300:10 [INFO] [stdout] | [INFO] [stdout] 300 | let mut deltaG = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:303:11 [INFO] [stdout] | [INFO] [stdout] 303 | let mut initiation_deltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:306:11 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `lowest_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:321:11 [INFO] [stdout] | [INFO] [stdout] 321 | let mut lowestDeltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `currentDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:324:8 [INFO] [stdout] | [INFO] [stdout] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:339:6 [INFO] [stdout] | [INFO] [stdout] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 20 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 4.49s [INFO] running `Command { std: "docker" "inspect" "41b177669f0fd8b71ba671b41cf24f5af00df206694545a5bb39756aa1f1d1e8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "41b177669f0fd8b71ba671b41cf24f5af00df206694545a5bb39756aa1f1d1e8", kill_on_drop: false }` [INFO] [stdout] 41b177669f0fd8b71ba671b41cf24f5af00df206694545a5bb39756aa1f1d1e8