[INFO] cloning repository https://github.com/mal2017/csc [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mal2017/csc" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Fcsc", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Fcsc'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d03c33ee5c6bc2e7583bd50315cc6203d9f34510 [INFO] checking mal2017/csc against try#f47dd4da3ae8c32c9e65d307bfe640b143e674df for pr-77526 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Fcsc" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mal2017/csc on toolchain f47dd4da3ae8c32c9e65d307bfe640b143e674df [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mal2017/csc [INFO] finished tweaking git repo https://github.com/mal2017/csc [INFO] tweaked toml for git repo https://github.com/mal2017/csc written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/mal2017/csc already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/mal2017/ngslib.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-types v0.4.0 [INFO] [stderr] Downloaded rust-htslib v0.22.0 [INFO] [stderr] Downloaded bindgen v0.36.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] e803a5e1c9da22745b6aea1a614f8b7078469ab135597d2b690fa964e88ef6c8 [INFO] running `Command { std: "docker" "start" "-a" "e803a5e1c9da22745b6aea1a614f8b7078469ab135597d2b690fa964e88ef6c8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e803a5e1c9da22745b6aea1a614f8b7078469ab135597d2b690fa964e88ef6c8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e803a5e1c9da22745b6aea1a614f8b7078469ab135597d2b690fa964e88ef6c8", kill_on_drop: false }` [INFO] [stdout] e803a5e1c9da22745b6aea1a614f8b7078469ab135597d2b690fa964e88ef6c8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f036d8680f658d5986cee4d3b4ba75dbf4f5bcb57ee3ced7f9071427a90ef907 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f036d8680f658d5986cee4d3b4ba75dbf4f5bcb57ee3ced7f9071427a90ef907", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling proc-macro2 v0.4.27 [INFO] [stderr] Compiling syn v0.15.31 [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Compiling regex v1.1.5 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling cfg-if v0.1.7 [INFO] [stderr] Compiling termcolor v1.0.4 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling arrayvec v0.4.10 [INFO] [stderr] Checking nodrop v0.1.13 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling byteorder v1.3.1 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ryu v0.2.7 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking matches v0.1.8 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking memoffset v0.2.1 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking scopeguard v0.3.3 [INFO] [stderr] Compiling num-integer v0.1.39 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking itoa v0.4.3 [INFO] [stderr] Checking percent-encoding v1.0.1 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Checking fnv v1.0.6 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking bytecount v0.3.2 [INFO] [stderr] Checking lazy_static v0.2.11 [INFO] [stderr] Checking unicode-width v0.1.5 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking bitflags v0.9.1 [INFO] [stderr] Checking strsim v0.7.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking bitflags v1.0.4 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Checking crossbeam-utils v0.2.2 [INFO] [stderr] Checking unicode-normalization v0.1.8 [INFO] [stderr] Compiling log v0.4.6 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling proc-macro2 v0.3.5 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Checking bit-set v0.5.1 [INFO] [stderr] Compiling libc v0.2.51 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking textwrap v0.10.0 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking num_cpus v1.10.0 [INFO] [stderr] Checking atty v0.2.11 [INFO] [stderr] Compiling quote v0.5.2 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Checking idna v0.1.5 [INFO] [stderr] Checking crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Checking aho-corasick v0.7.3 [INFO] [stderr] Checking csv-core v0.1.5 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Checking crossbeam-deque v0.2.0 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Checking rayon-core v1.4.1 [INFO] [stderr] Checking rayon v1.0.3 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling serde_derive v1.0.90 [INFO] [stderr] Checking serde v1.0.90 [INFO] [stderr] Checking bio-types v0.4.0 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking csv v1.0.7 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking clap v2.32.0 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Checking ngslib v0.1.0 (https://github.com/mal2017/ngslib.git?tag=0.1.0-alpha.2#b34385bf) [INFO] [stderr] Checking cutsites v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `bio::io::bed::*` [INFO] [stdout] --> src/main.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use bio::io::bed::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::bed::Record` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use bio::io::bed::Record; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/main.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ArgGroup` [INFO] [stdout] --> src/main.rs:25:26 [INFO] [stdout] | [INFO] [stdout] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::bed::*` [INFO] [stdout] --> src/main.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use bio::io::bed::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::io::bed::Record` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use bio::io::bed::Record; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/main.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ArgGroup` [INFO] [stdout] --> src/main.rs:25:26 [INFO] [stdout] | [INFO] [stdout] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:101:9 [INFO] [stdout] | [INFO] [stdout] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:101:9 [INFO] [stdout] | [INFO] [stdout] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3m 08s [INFO] running `Command { std: "docker" "inspect" "f036d8680f658d5986cee4d3b4ba75dbf4f5bcb57ee3ced7f9071427a90ef907", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f036d8680f658d5986cee4d3b4ba75dbf4f5bcb57ee3ced7f9071427a90ef907", kill_on_drop: false }` [INFO] [stdout] f036d8680f658d5986cee4d3b4ba75dbf4f5bcb57ee3ced7f9071427a90ef907