[INFO] cloning repository https://github.com/flexplicateur/rSPRINT [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/flexplicateur/rSPRINT" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fflexplicateur%2FrSPRINT", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fflexplicateur%2FrSPRINT'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 950e111452c5d798c85e4957f6c27489040b776e [INFO] checking flexplicateur/rSPRINT against try#f47dd4da3ae8c32c9e65d307bfe640b143e674df for pr-77526 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fflexplicateur%2FrSPRINT" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/flexplicateur/rSPRINT on toolchain f47dd4da3ae8c32c9e65d307bfe640b143e674df [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/flexplicateur/rSPRINT [INFO] finished tweaking git repo https://github.com/flexplicateur/rSPRINT [INFO] tweaked toml for git repo https://github.com/flexplicateur/rSPRINT written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/flexplicateur/rSPRINT already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/bsteinb/rsmpi` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded serde_bytes v0.11.3 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded ocl-core v0.11.2 [INFO] [stderr] Downloaded bv v0.10.0 [INFO] [stderr] Downloaded serde-pickle v0.6.0 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded bstr v0.2.9 [INFO] [stderr] Downloaded multimap v0.4.0 [INFO] [stderr] Downloaded statrs v0.9.0 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] [stderr] Downloaded erased-serde v0.3.10 [INFO] [stderr] Downloaded socketstat v0.1.0 [INFO] [stderr] Downloaded procinfo v0.4.2 [INFO] [stderr] Downloaded csv v1.1.2 [INFO] [stderr] Downloaded strum v0.13.0 [INFO] [stderr] Downloaded nom v2.2.1 [INFO] [stderr] Downloaded heapless v0.5.2 [INFO] [stderr] Downloaded make-cmd v0.1.0 [INFO] [stderr] Downloaded ocl-core-vector v0.1.0 [INFO] [stderr] Downloaded strum_macros v0.13.0 [INFO] [stderr] Downloaded serde_pipe v0.1.3 [INFO] [stderr] Downloaded abort_on_panic v2.0.0 [INFO] [stderr] Downloaded bindgen v0.49.4 [INFO] [stderr] Downloaded as-slice v0.1.2 [INFO] [stderr] Downloaded bio v0.28.2 [INFO] [stderr] Downloaded cl-sys v0.4.2 [INFO] [stderr] Downloaded qutex v0.2.3 [INFO] [stderr] Downloaded iter-read v0.2.1 [INFO] [stderr] Downloaded num-bigint v0.2.5 [INFO] [stderr] Downloaded build_id v0.1.5 [INFO] [stderr] Downloaded build_id v0.2.1 [INFO] [stderr] Downloaded relative v0.1.5 [INFO] [stderr] Downloaded constellation-internal v0.1.8 [INFO] [stderr] Downloaded serde_closure v0.2.9 [INFO] [stderr] Downloaded libffi v0.7.0 [INFO] [stderr] Downloaded serde_closure v0.1.5 [INFO] [stderr] Downloaded replace_with v0.1.5 [INFO] [stderr] Downloaded notifier v0.1.3 [INFO] [stderr] Downloaded serde_closure_derive v0.2.9 [INFO] [stderr] Downloaded metatype v0.2.0 [INFO] [stderr] Downloaded serde_traitobject v0.2.4 [INFO] [stderr] Downloaded tcp_typed v0.1.4 [INFO] [stderr] Downloaded palaver v0.2.8 [INFO] [stderr] Downloaded relative v0.2.2 [INFO] [stderr] Downloaded libffi-sys v0.7.0 [INFO] [stderr] Downloaded ocl v0.19.3 [INFO] [stderr] Downloaded constellation-rs v0.1.8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d5bf8cc15e43a226449105656404d2d3a19cd4e81912e6af5c1e496a013418d5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d5bf8cc15e43a226449105656404d2d3a19cd4e81912e6af5c1e496a013418d5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d5bf8cc15e43a226449105656404d2d3a19cd4e81912e6af5c1e496a013418d5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d5bf8cc15e43a226449105656404d2d3a19cd4e81912e6af5c1e496a013418d5", kill_on_drop: false }` [INFO] [stdout] d5bf8cc15e43a226449105656404d2d3a19cd4e81912e6af5c1e496a013418d5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+f47dd4da3ae8c32c9e65d307bfe640b143e674df" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3003caba0cda3ec86d4c19f8ea6e7ddc579e1a0233b7e44fce25780605bdb453 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3003caba0cda3ec86d4c19f8ea6e7ddc579e1a0233b7e44fce25780605bdb453", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.7 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling memchr v2.3.0 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling nix v0.15.0 [INFO] [stderr] Compiling heapless v0.5.2 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Checking void v1.0.2 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling regex-syntax v0.6.13 [INFO] [stderr] Compiling bindgen v0.49.4 [INFO] [stderr] Checking scopeguard v1.0.0 [INFO] 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v0.3.6 [INFO] [stderr] Checking num-bigint v0.1.44 [INFO] [stderr] Checking backtrace v0.3.42 [INFO] [stderr] Checking num-rational v0.1.42 [INFO] [stderr] Checking console v0.9.1 [INFO] [stderr] Checking num v0.1.42 [INFO] [stderr] Checking ocl-core-vector v0.1.0 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling strum_macros v0.13.0 [INFO] [stderr] Compiling synstructure v0.12.3 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling proc-macro-hack v0.5.11 [INFO] [stderr] Compiling failure_derive v0.1.6 [INFO] [stderr] Checking failure v0.1.6 [INFO] [stderr] Compiling futures-macro v0.3.1 [INFO] [stderr] Compiling serde_closure_derive v0.2.9 [INFO] [stderr] Checking futures-util v0.3.1 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Checking futures-executor v0.3.1 [INFO] [stderr] Checking futures v0.3.1 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking uuid v0.8.1 [INFO] [stderr] Checking uuid v0.7.4 [INFO] [stderr] 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(https://github.com/bsteinb/rsmpi?rev=f9aec8b8d82#f9aec8b8) [INFO] [stderr] Checking crossbeam-deque v0.7.2 [INFO] [stderr] Checking crossbeam v0.7.3 [INFO] [stderr] Checking qutex v0.2.3 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking ocl v0.19.3 [INFO] [stderr] Checking palaver v0.2.8 [INFO] [stderr] Checking indicatif v0.13.0 [INFO] [stderr] Checking socketstat v0.1.0 [INFO] [stderr] Checking build_id v0.1.5 [INFO] [stderr] Checking constellation-internal v0.1.8 [INFO] [stderr] Checking tcp_typed v0.1.4 [INFO] [stderr] Checking relative v0.1.5 [INFO] [stderr] Checking serde_closure v0.1.5 [INFO] [stderr] Checking serde_traitobject v0.2.4 [INFO] [stderr] Checking notifier v0.1.3 [INFO] [stderr] Compiling libffi-sys v0.7.0 [INFO] [stderr] Compiling mpi-sys v0.2.0 (https://github.com/bsteinb/rsmpi?rev=f9aec8b8d82#f9aec8b8) [INFO] [stderr] Checking libffi v0.7.0 [INFO] [stderr] Checking rusty-sprint v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/smer.rs:213:20 [INFO] [stdout] | [INFO] [stdout] 213 | .map(|(i, smer)| smer.clone()) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `smer` [INFO] [stdout] --> src/smer.rs:217:26 [INFO] [stdout] | [INFO] [stdout] 217 | .filter(|(i, smer)| *i >= first_smer && *i <= last_smer) [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_smer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/smer.rs:224:25 [INFO] [stdout] | [INFO] [stdout] 224 | .for_each(|(i, smer)| smer.find_similar_smers(&smers, seed, t_sim)); [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `len1` [INFO] [stdout] --> src/smer.rs:113:25 [INFO] [stdout] | [INFO] [stdout] 113 | let len1 = proteins.get(&location1.protein_id).unwrap().len(); [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_len1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `len2` [INFO] [stdout] --> src/smer.rs:114:25 [INFO] [stdout] | [INFO] [stdout] 114 | let len2 = proteins.get(&location2.protein_id).unwrap().len(); [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_len2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> src/smer.rs:105:86 [INFO] [stdout] | [INFO] [stdout] 105 | pub fn find_hits(&self, smers: &Vec, proteins: &HashMap, seed: &Seed, [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `t_sim` [INFO] [stdout] --> src/smer.rs:106:40 [INFO] [stdout] | [INFO] [stdout] 106 | kmer_size: usize, t_sim: i16, t_hit: i16) -> Vec { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_t_sim` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence1` [INFO] [stdout] --> src/hsp.rs:383:15 [INFO] [stdout] | [INFO] [stdout] 383 | fn max_offset(sequence1: &str, position1: usize, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence2` [INFO] [stdout] --> src/hsp.rs:384:15 [INFO] [stdout] | [INFO] [stdout] 384 | sequence2: &str, position2: usize, kmer_size: usize) -> usize { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Record` [INFO] [stdout] --> src/smer.rs:240:23 [INFO] [stdout] | [INFO] [stdout] 240 | let test_record = Record::with_attrs("test_protein", None, b"MEEPQSDPSVEA"); [INFO] [stdout] | ^^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing one of these items [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::bed::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fasta::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fastq::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::gff::Record; [INFO] [stdout] | [INFO] [stdout] and 1 other candidate [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Record` [INFO] [stdout] --> src/smer.rs:249:23 [INFO] [stdout] | [INFO] [stdout] 249 | let test_record = Record::with_attrs("test_protein", None, b"MEEPQSDPSVEA"); [INFO] [stdout] | ^^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing one of these items [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::bed::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fasta::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fastq::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::gff::Record; [INFO] [stdout] | [INFO] [stdout] and 1 other candidate [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Record` [INFO] [stdout] --> src/smer.rs:258:23 [INFO] [stdout] | [INFO] [stdout] 258 | let test_record = Record::with_attrs("test_protein", None, b"TTXAATXAATTT"); [INFO] [stdout] | ^^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing one of these items [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::bed::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fasta::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fastq::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::gff::Record; [INFO] [stdout] | [INFO] [stdout] and 1 other candidate [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Record` [INFO] [stdout] --> src/smer.rs:270:24 [INFO] [stdout] | [INFO] [stdout] 270 | let test_record1 = Record::with_attrs("test_protein1", None, b"SCMGGMNRRPIL"); [INFO] [stdout] | ^^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing one of these items [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::bed::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fasta::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fastq::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::gff::Record; [INFO] [stdout] | [INFO] [stdout] and 1 other candidate [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Record` [INFO] [stdout] --> src/smer.rs:271:24 [INFO] [stdout] | [INFO] [stdout] 271 | let test_record2 = Record::with_attrs("test_protein2", None, b"THTAASYKKKVI"); [INFO] [stdout] | ^^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing one of these items [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::bed::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fasta::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::fastq::Record; [INFO] [stdout] | [INFO] [stdout] 1 | use bio::io::gff::Record; [INFO] [stdout] | [INFO] [stdout] and 1 other candidate [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `SEEDS` in this scope [INFO] [stdout] --> src/smer.rs:272:26 [INFO] [stdout] | [INFO] [stdout] 272 | let seed = Seed::new(SEEDS[1]); [INFO] [stdout] | ^^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing this static [INFO] [stdout] | [INFO] [stdout] 1 | use crate::constants::SEEDS; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0061]: this function takes 1 argument but 2 arguments were supplied [INFO] [stdout] --> src/smer.rs:277:22 [INFO] [stdout] | [INFO] [stdout] 34 | pub fn new(value: u64) -> Smer { [INFO] [stdout] | ------------------------------ defined here [INFO] [stdout] ... [INFO] [stdout] 277 | let similarity = Smer::new(smer1, seed.clone()).compare(&Smer::new(smer2, seed.clone())); [INFO] [stdout] | ^^^^^^^^^ ----- ------------ supplied 2 arguments [INFO] [stdout] | | [INFO] [stdout] | expected 1 argument [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0061]: this function takes 2 arguments but 1 argument was supplied [INFO] [stdout] --> src/smer.rs:277:53 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn compare(&self, smer: &Smer, seed: &Seed) -> i16 { [INFO] [stdout] | ------------------------------------------------------ defined here [INFO] [stdout] ... [INFO] [stdout] 277 | let similarity = Smer::new(smer1, seed.clone()).compare(&Smer::new(smer2, seed.clone())); [INFO] [stdout] | ^^^^^^^ ------------------------------- supplied 1 argument [INFO] [stdout] | | [INFO] [stdout] | expected 2 arguments [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0061]: this function takes 1 argument but 2 arguments were supplied [INFO] [stdout] --> src/smer.rs:277:62 [INFO] [stdout] | [INFO] [stdout] 34 | pub fn new(value: u64) -> Smer { [INFO] [stdout] | ------------------------------ defined here [INFO] [stdout] ... [INFO] [stdout] 277 | let similarity = Smer::new(smer1, seed.clone()).compare(&Smer::new(smer2, seed.clone())); [INFO] [stdout] | ^^^^^^^^^ ----- ------------ supplied 2 arguments [INFO] [stdout] | | [INFO] [stdout] | expected 1 argument [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 9 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0061, E0425, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0061`. [INFO] [stdout] [INFO] [stderr] error: could not compile `rusty-sprint` [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] warning: unused import: `Arg` [INFO] [stdout] --> src/bin/extractor.rs:3:17 [INFO] [stdout] | [INFO] [stdout] 3 | use clap::{App, Arg}; [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `HashSet` [INFO] [stdout] --> src/bin/extractor.rs:5:33 [INFO] [stdout] | [INFO] [stdout] 5 | use std::collections::{HashMap, HashSet}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Arg` [INFO] [stdout] --> src/bin/extractor.rs:3:17 [INFO] [stdout] | [INFO] [stdout] 3 | use clap::{App, Arg}; [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `HashSet` [INFO] [stdout] --> src/bin/extractor.rs:5:33 [INFO] [stdout] | [INFO] [stdout] 5 | use std::collections::{HashMap, HashSet}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/bin/mpi-extractor.rs:1:1 [INFO] [stdout] | [INFO] [stdout] 1 | #[macro_use] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `App`, `Arg` [INFO] [stdout] --> src/bin/mpi-extractor.rs:3:12 [INFO] [stdout] | [INFO] [stdout] 3 | use clap::{App, Arg}; [INFO] [stdout] | ^^^ ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/bin/mpi-extractor.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `HashMap`, `HashSet` [INFO] [stdout] --> src/bin/mpi-extractor.rs:5:24 [INFO] [stdout] | [INFO] [stdout] 5 | use std::collections::{HashMap, HashSet}; [INFO] [stdout] | ^^^^^^^ ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ProgressBar`, `ProgressStyle` [INFO] [stdout] --> src/bin/mpi-extractor.rs:6:17 [INFO] [stdout] | [INFO] [stdout] 6 | use indicatif::{ProgressBar, ProgressStyle}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::vec::Vec` [INFO] [stdout] --> src/bin/mpi-extractor.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use std::vec::Vec; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rustysprint::sequence::Sequence` [INFO] [stdout] --> src/bin/mpi-extractor.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rustysprint::sequence::Sequence; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Seed` [INFO] [stdout] --> src/bin/mpi-extractor.rs:9:25 [INFO] [stdout] | [INFO] [stdout] 9 | use rustysprint::seed::{Seed}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SEEDS` [INFO] [stdout] --> src/bin/mpi-extractor.rs:10:30 [INFO] [stdout] | [INFO] [stdout] 10 | use rustysprint::constants::{SEEDS}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `HSP` [INFO] [stdout] --> src/bin/mpi-extractor.rs:11:24 [INFO] [stdout] | [INFO] [stdout] 11 | use rustysprint::hsp::{HSP}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `SmerOccurence`, `Smer`, `extract_all_smers`, `group_smer_occurences`, `process_chunk` [INFO] [stdout] --> src/bin/mpi-extractor.rs:12:25 [INFO] [stdout] | [INFO] [stdout] 12 | use rustysprint::smer::{SmerOccurence, Smer, extract_all_smers, group_smer_occurences, process_chunk}; [INFO] [stdout] | ^^^^^^^^^^^^^ ^^^^ ^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rustysprint::fileio` [INFO] [stdout] --> src/bin/mpi-extractor.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | use rustysprint::fileio; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rustysprint::hsp_table::HSPTable` [INFO] [stdout] --> src/bin/mpi-extractor.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use rustysprint::hsp_table::HSPTable; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `mpi::traits::*` [INFO] [stdout] --> src/bin/mpi-extractor.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use mpi::traits::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/bin/predictor.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/bin/mpi-extractor.rs:1:1 [INFO] [stdout] | [INFO] [stdout] 1 | #[macro_use] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `App`, `Arg` [INFO] [stdout] --> src/bin/mpi-extractor.rs:3:12 [INFO] [stdout] | [INFO] [stdout] 3 | use clap::{App, Arg}; [INFO] [stdout] | ^^^ ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/bin/mpi-extractor.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `HashMap`, `HashSet` [INFO] [stdout] --> src/bin/mpi-extractor.rs:5:24 [INFO] [stdout] | [INFO] [stdout] 5 | use std::collections::{HashMap, HashSet}; [INFO] [stdout] | ^^^^^^^ ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ProgressBar`, `ProgressStyle` [INFO] [stdout] --> src/bin/mpi-extractor.rs:6:17 [INFO] [stdout] | [INFO] [stdout] 6 | use indicatif::{ProgressBar, ProgressStyle}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::vec::Vec` [INFO] [stdout] --> src/bin/mpi-extractor.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use std::vec::Vec; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rustysprint::sequence::Sequence` [INFO] [stdout] --> src/bin/mpi-extractor.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rustysprint::sequence::Sequence; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Seed` [INFO] [stdout] --> src/bin/mpi-extractor.rs:9:25 [INFO] [stdout] | [INFO] [stdout] 9 | use rustysprint::seed::{Seed}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SEEDS` [INFO] [stdout] --> src/bin/mpi-extractor.rs:10:30 [INFO] [stdout] | [INFO] [stdout] 10 | use rustysprint::constants::{SEEDS}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `HSP` [INFO] [stdout] --> src/bin/mpi-extractor.rs:11:24 [INFO] [stdout] | [INFO] [stdout] 11 | use rustysprint::hsp::{HSP}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `SmerOccurence`, `Smer`, `extract_all_smers`, `group_smer_occurences`, `process_chunk` [INFO] [stdout] --> src/bin/mpi-extractor.rs:12:25 [INFO] [stdout] | [INFO] [stdout] 12 | use rustysprint::smer::{SmerOccurence, Smer, extract_all_smers, group_smer_occurences, process_chunk}; [INFO] [stdout] | ^^^^^^^^^^^^^ ^^^^ ^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rustysprint::fileio` [INFO] [stdout] --> src/bin/mpi-extractor.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | use rustysprint::fileio; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rustysprint::hsp_table::HSPTable` [INFO] [stdout] --> src/bin/mpi-extractor.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use rustysprint::hsp_table::HSPTable; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `mpi::traits::*` [INFO] [stdout] --> src/bin/mpi-extractor.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use mpi::traits::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Arc`, `Mutex` [INFO] [stdout] --> src/bin/predictor.rs:9:17 [INFO] [stdout] | [INFO] [stdout] 9 | use std::sync::{Arc, Mutex}; [INFO] [stdout] | ^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 14 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/bin/predictor.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Arc`, `Mutex` [INFO] [stdout] --> src/bin/predictor.rs:9:17 [INFO] [stdout] | [INFO] [stdout] 9 | use std::sync::{Arc, Mutex}; [INFO] [stdout] | ^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `indicatif::ProgressBar` [INFO] [stdout] --> src/bin/preprocessing.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use indicatif::ProgressBar; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/bin/preprocessing.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rustysprint::protein_pair::ProteinPair` [INFO] [stdout] --> src/bin/preprocessing.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use rustysprint::protein_pair::ProteinPair; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/bin/extractor.rs:128:13 [INFO] [stdout] | [INFO] [stdout] 128 | hsp_set.save(hsp_file); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/bin/predictor.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/bin/predictor.rs:41:23 [INFO] [stdout] | [INFO] [stdout] 41 | .map(|(i, (k, v))| (k.clone(), i)) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_size` [INFO] [stdout] --> src/bin/predictor.rs:31:9 [INFO] [stdout] | [INFO] [stdout] 31 | let kmer_size: usize = matches.value_of("kmer_size").unwrap() [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `test_pairs` [INFO] [stdout] --> src/bin/predictor.rs:67:9 [INFO] [stdout] | [INFO] [stdout] 67 | let test_pairs: Vec = fileio::load_pairs(test_set); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_test_pairs` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `proteome_size` [INFO] [stdout] --> src/bin/predictor.rs:141:9 [INFO] [stdout] | [INFO] [stdout] 141 | let proteome_size = protein_indices.len(); [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_proteome_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `temp` [INFO] [stdout] --> src/bin/predictor.rs:146:9 [INFO] [stdout] | [INFO] [stdout] 146 | let mut temp: Vec<(usize, usize, f32)> = vec![]; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_temp` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `indicatif::ProgressBar` [INFO] [stdout] --> src/bin/preprocessing.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use indicatif::ProgressBar; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::FromIterator` [INFO] [stdout] --> src/bin/preprocessing.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rustysprint::protein_pair::ProteinPair` [INFO] [stdout] --> src/bin/preprocessing.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use rustysprint::protein_pair::ProteinPair; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 14 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/predictor.rs:75:13 [INFO] [stdout] | [INFO] [stdout] 75 | let mut hsp_set: HashSet = fileio::load_hsps(hsps_file); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/predictor.rs:146:9 [INFO] [stdout] | [INFO] [stdout] 146 | let mut temp: Vec<(usize, usize, f32)> = vec![]; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `scores_vec` should have an upper case name [INFO] [stdout] --> src/bin/predictor.rs:16:12 [INFO] [stdout] | [INFO] [stdout] 16 | static mut scores_vec: Vec> = Vec::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper case: `SCORES_VEC` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/bin/predictor.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/bin/preprocessing.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/bin/preprocessing.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/bin/preprocessing.rs:70:10 [INFO] [stdout] | [INFO] [stdout] 70 | for (k, v) in processed_hsps.iter() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `k` [INFO] [stdout] --> src/bin/preprocessing.rs:70:10 [INFO] [stdout] | [INFO] [stdout] 70 | for (k, v) in processed_hsps.iter() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_k` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/bin/predictor.rs:41:23 [INFO] [stdout] | [INFO] [stdout] 41 | .map(|(i, (k, v))| (k.clone(), i)) [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_size` [INFO] [stdout] --> src/bin/predictor.rs:31:9 [INFO] [stdout] | [INFO] [stdout] 31 | let kmer_size: usize = matches.value_of("kmer_size").unwrap() [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `test_pairs` [INFO] [stdout] --> src/bin/predictor.rs:67:9 [INFO] [stdout] | [INFO] [stdout] 67 | let test_pairs: Vec = fileio::load_pairs(test_set); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_test_pairs` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `proteome_size` [INFO] [stdout] --> src/bin/predictor.rs:141:9 [INFO] [stdout] | [INFO] [stdout] 141 | let proteome_size = protein_indices.len(); [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_proteome_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `temp` [INFO] [stdout] --> src/bin/predictor.rs:146:9 [INFO] [stdout] | [INFO] [stdout] 146 | let mut temp: Vec<(usize, usize, f32)> = vec![]; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_temp` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/predictor.rs:75:13 [INFO] [stdout] | [INFO] [stdout] 75 | let mut hsp_set: HashSet = fileio::load_hsps(hsps_file); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/bin/predictor.rs:146:9 [INFO] [stdout] | [INFO] [stdout] 146 | let mut temp: Vec<(usize, usize, f32)> = vec![]; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `scores_vec` should have an upper case name [INFO] [stdout] --> src/bin/predictor.rs:16:12 [INFO] [stdout] | [INFO] [stdout] 16 | static mut scores_vec: Vec> = Vec::new(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper case: `SCORES_VEC` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/bin/predictor.rs:130:9 [INFO] [stdout] | [INFO] [stdout] 130 | fileio::save_scores(&scores_vec, &index_to_protein, output); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/bin/extractor.rs:128:13 [INFO] [stdout] | [INFO] [stdout] 128 | hsp_set.save(hsp_file); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/bin/predictor.rs:130:9 [INFO] [stdout] | [INFO] [stdout] 130 | fileio::save_scores(&scores_vec, &index_to_protein, output); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/bin/preprocessing.rs:72:13 [INFO] [stdout] | [INFO] [stdout] 72 | file1.write_all(format!("{}\n", hsp).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/bin/preprocessing.rs:72:13 [INFO] [stdout] | [INFO] [stdout] 72 | file1.write_all(format!("{}\n", hsp).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "3003caba0cda3ec86d4c19f8ea6e7ddc579e1a0233b7e44fce25780605bdb453", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3003caba0cda3ec86d4c19f8ea6e7ddc579e1a0233b7e44fce25780605bdb453", kill_on_drop: false }` [INFO] [stdout] 3003caba0cda3ec86d4c19f8ea6e7ddc579e1a0233b7e44fce25780605bdb453