[INFO] fetching crate netcdf 0.5.1... [INFO] checking netcdf-0.5.1 against master#0d37dca25a51fb900a402c94c8818ad1c2789e30 for pr-77526 [INFO] extracting crate netcdf 0.5.1 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate netcdf 0.5.1 on toolchain 0d37dca25a51fb900a402c94c8818ad1c2789e30 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d37dca25a51fb900a402c94c8818ad1c2789e30" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf 0.5.1 [INFO] finished tweaking crates.io crate netcdf 0.5.1 [INFO] tweaked toml for crates.io crate netcdf 0.5.1 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate netcdf 0.5.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d37dca25a51fb900a402c94c8818ad1c2789e30" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+0d37dca25a51fb900a402c94c8818ad1c2789e30" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6887e418978e264fadc20e501e1f5e9ce0ba524853bef23031f8a9a00e87b969 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6887e418978e264fadc20e501e1f5e9ce0ba524853bef23031f8a9a00e87b969", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6887e418978e264fadc20e501e1f5e9ce0ba524853bef23031f8a9a00e87b969", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6887e418978e264fadc20e501e1f5e9ce0ba524853bef23031f8a9a00e87b969", kill_on_drop: false }` [INFO] [stdout] 6887e418978e264fadc20e501e1f5e9ce0ba524853bef23031f8a9a00e87b969 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+0d37dca25a51fb900a402c94c8818ad1c2789e30" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 676fe6a1a37a90e89659ca21432f3bb7ef9743e6a69e15e0831443657cdee82a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "676fe6a1a37a90e89659ca21432f3bb7ef9743e6a69e15e0831443657cdee82a", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.69 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Compiling libloading v0.6.2 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling cc v1.0.58 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Compiling netcdf-sys v0.3.2 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling proc-macro-error v1.0.2 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking bitflags v1.2.1 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking clap v2.33.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-9f7a24b17be8cf24/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x557f91ccceb0 - std::backtrace_rs::backtrace::libunwind::trace::he85dfb3ae4206056 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x557f91ccceb0 - std::backtrace_rs::backtrace::trace_unsynchronized::h1ad28094d7b00c21 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x557f91ccceb0 - std::sys_common::backtrace::_print_fmt::h901b54610713cd21 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x557f91ccceb0 - ::fmt::hb0ad78ee1571f7e0 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x557f91ceae1c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x557f91cc9de2 - std::io::Write::write_fmt::hf7b7d7b243f84a36 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/io/mod.rs:1516 [INFO] [stderr] 6: 0x557f91ccf1dd - std::sys_common::backtrace::_print::hd093978a5287b8ff [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x557f91ccf1dd - std::sys_common::backtrace::print::h20f46787581d56d7 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x557f91ccf1dd - std::panicking::default_hook::{{closure}}::h486cbb4b82ffc357 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x557f91ccee88 - std::panicking::default_hook::h4190c9e3edd4d591 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x557f91ccf8c1 - std::panicking::rust_panic_with_hook::h72e78719cdda225c [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x557f91bba73c - std::panicking::begin_panic::{{closure}}::h497cb78843cdf61a [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x557f91bba5b9 - std::sys_common::backtrace::__rust_end_short_backtrace::h67fbadc0d60229cb [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x557f91bba667 - std::panicking::begin_panic::h2cbc52d7f8506930 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x557f91aa21fc - build_script_build::LibrarySearcher::try_locate_hdf5_library::h194a37f6c9e6c951 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x557f91aa3abc - build_script_build::main::he3aeace68e639ab8 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x557f91aa9b4b - core::ops::function::FnOnce::call_once::h5ed10907d22184e1 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x557f91ab079e - std::sys_common::backtrace::__rust_begin_short_backtrace::hbce65d01e580b89a [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x557f91aaae01 - std::rt::lang_start::{{closure}}::h10c069f9f401dd0d [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x557f91ccfce7 - core::ops::function::impls:: for &F>::call_once::h5e15f43ce28787f7 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x557f91ccfce7 - std::panicking::try::do_call::h764f1891769113e9 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/panicking.rs:381 [INFO] [stderr] 21: 0x557f91ccfce7 - std::panicking::try::h0f2fe4fdd5e0ad19 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/panicking.rs:345 [INFO] [stderr] 22: 0x557f91ccfce7 - std::panic::catch_unwind::h1634e40dd3a19f80 [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/panic.rs:382 [INFO] [stderr] 23: 0x557f91ccfce7 - std::rt::lang_start_internal::h8d4bc7b854bbd5fe [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x557f91aaadd7 - std::rt::lang_start::h5aa00e582520317e [INFO] [stderr] at /rustc/0d37dca25a51fb900a402c94c8818ad1c2789e30/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x557f91aa512a - main [INFO] [stderr] 26: 0x7fb1d3d040b3 - __libc_start_main [INFO] [stderr] 27: 0x557f91a9d0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "676fe6a1a37a90e89659ca21432f3bb7ef9743e6a69e15e0831443657cdee82a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "676fe6a1a37a90e89659ca21432f3bb7ef9743e6a69e15e0831443657cdee82a", kill_on_drop: false }` [INFO] [stdout] 676fe6a1a37a90e89659ca21432f3bb7ef9743e6a69e15e0831443657cdee82a