[INFO] cloning repository https://github.com/CompEpigen/hapcounter
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/CompEpigen/hapcounter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCompEpigen%2Fhapcounter", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCompEpigen%2Fhapcounter'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e4c1ec1784aecff0b55127b4a9565eedc182f172
[INFO] checking CompEpigen/hapcounter against master#0d37dca25a51fb900a402c94c8818ad1c2789e30 for pr-77526
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCompEpigen%2Fhapcounter" "/workspace/builds/worker-12/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-12/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/CompEpigen/hapcounter on toolchain 0d37dca25a51fb900a402c94c8818ad1c2789e30
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d37dca25a51fb900a402c94c8818ad1c2789e30" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/CompEpigen/hapcounter
[INFO] finished tweaking git repo https://github.com/CompEpigen/hapcounter
[INFO] tweaked toml for git repo https://github.com/CompEpigen/hapcounter written to /workspace/builds/worker-12/source/Cargo.toml
[INFO] crate git repo https://github.com/CompEpigen/hapcounter already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+0d37dca25a51fb900a402c94c8818ad1c2789e30" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+0d37dca25a51fb900a402c94c8818ad1c2789e30" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5aa82e314e084a33c6aa69172d0bdbb4d742c888e77ff1f7b9679c62103110e9
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "5aa82e314e084a33c6aa69172d0bdbb4d742c888e77ff1f7b9679c62103110e9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5aa82e314e084a33c6aa69172d0bdbb4d742c888e77ff1f7b9679c62103110e9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5aa82e314e084a33c6aa69172d0bdbb4d742c888e77ff1f7b9679c62103110e9", kill_on_drop: false }`
[INFO] [stdout] 5aa82e314e084a33c6aa69172d0bdbb4d742c888e77ff1f7b9679c62103110e9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+0d37dca25a51fb900a402c94c8818ad1c2789e30" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 530efc9b9d314a68b8e9d3878c59bb29b6fa01904956ab9217a76a7c3ab53455
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "530efc9b9d314a68b8e9d3878c59bb29b6fa01904956ab9217a76a7c3ab53455", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling syn v1.0.18
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling bindgen v0.53.2
[INFO] [stderr]    Compiling lazycell v1.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking regex-syntax v0.6.17
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.8+1.0.8
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling openssl-sys v0.9.55
[INFO] [stderr]    Compiling curl-sys v0.4.31+curl-7.70.0
[INFO] [stderr]    Compiling lzma-sys v0.1.15
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling proc-macro2 v1.0.10
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling clang-sys v0.29.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling nom v5.1.1
[INFO] [stderr]    Compiling quote v1.0.4
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]    Compiling regex v1.3.7
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.106
[INFO] [stderr]    Compiling snafu-derive v0.6.6
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]     Checking snafu v0.6.0
[INFO] [stderr]    Compiling hts-sys v1.10.2
[INFO] [stderr]     Checking bio-types v0.6.0
[INFO] [stderr]     Checking rust-htslib v0.30.0
[INFO] [stderr]     Checking hapcounter v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: value assigned to `pos_on_read` is never read
[INFO] [stdout]    --> src/main.rs:120:6
[INFO] [stdout]     |
[INFO] [stdout] 120 |     let mut pos_on_read: usize = 0;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` on by default
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `qc`
[INFO] [stdout]    --> src/main.rs:178:8
[INFO] [stdout]     |
[INFO] [stdout] 178 |             let qc = args[5].clone();
[INFO] [stdout]     |                 ^^ help: if this is intentional, prefix it with an underscore: `_qc`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `doqc` is never read
[INFO] [stdout]    --> src/main.rs:186:7
[INFO] [stdout]     |
[INFO] [stdout] 186 |         let mut doqc: bool = true;
[INFO] [stdout]     |             ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `base` is never read
[INFO] [stdout]    --> src/main.rs:228:7
[INFO] [stdout]     |
[INFO] [stdout] 228 |         let mut base = String::new();
[INFO] [stdout]     |             ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/main.rs:15:9
[INFO] [stdout]    |
[INFO] [stdout] 15 |     let mut args: Vec<String> = env::args().collect();
[INFO] [stdout]    |         ----^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `pos_on_read` is never read
[INFO] [stdout]    --> src/main.rs:120:6
[INFO] [stdout]     |
[INFO] [stdout] 120 |     let mut pos_on_read: usize = 0;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` on by default
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `qc`
[INFO] [stdout]    --> src/main.rs:178:8
[INFO] [stdout]     |
[INFO] [stdout] 178 |             let qc = args[5].clone();
[INFO] [stdout]     |                 ^^ help: if this is intentional, prefix it with an underscore: `_qc`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `doqc` is never read
[INFO] [stdout]    --> src/main.rs:186:7
[INFO] [stdout]     |
[INFO] [stdout] 186 |         let mut doqc: bool = true;
[INFO] [stdout]     |             ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `base` is never read
[INFO] [stdout]    --> src/main.rs:228:7
[INFO] [stdout]     |
[INFO] [stdout] 228 |         let mut base = String::new();
[INFO] [stdout]     |             ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/main.rs:15:9
[INFO] [stdout]    |
[INFO] [stdout] 15 |     let mut args: Vec<String> = env::args().collect();
[INFO] [stdout]    |         ----^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 08s
[INFO] running `Command { std: "docker" "inspect" "530efc9b9d314a68b8e9d3878c59bb29b6fa01904956ab9217a76a7c3ab53455", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "530efc9b9d314a68b8e9d3878c59bb29b6fa01904956ab9217a76a7c3ab53455", kill_on_drop: false }`
[INFO] [stdout] 530efc9b9d314a68b8e9d3878c59bb29b6fa01904956ab9217a76a7c3ab53455