[INFO] fetching crate d4-hts 0.2.17... [INFO] checking d4-hts-0.2.17 against try#7c3a44cf5f95fa5cf164a312bdcf845157af7093 for pr-77325 [INFO] extracting crate d4-hts 0.2.17 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate d4-hts 0.2.17 on toolchain 7c3a44cf5f95fa5cf164a312bdcf845157af7093 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7c3a44cf5f95fa5cf164a312bdcf845157af7093" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.2.17 [INFO] finished tweaking crates.io crate d4-hts 0.2.17 [INFO] tweaked toml for crates.io crate d4-hts 0.2.17 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7c3a44cf5f95fa5cf164a312bdcf845157af7093" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7c3a44cf5f95fa5cf164a312bdcf845157af7093" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+7c3a44cf5f95fa5cf164a312bdcf845157af7093" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0d69933475cda2f190db79f15d7996d00c576172dd24f16482f7ca12faf6b61b [INFO] running `Command { std: "docker" "start" "-a" "0d69933475cda2f190db79f15d7996d00c576172dd24f16482f7ca12faf6b61b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0d69933475cda2f190db79f15d7996d00c576172dd24f16482f7ca12faf6b61b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0d69933475cda2f190db79f15d7996d00c576172dd24f16482f7ca12faf6b61b", kill_on_drop: false }` [INFO] [stdout] 0d69933475cda2f190db79f15d7996d00c576172dd24f16482f7ca12faf6b61b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+7c3a44cf5f95fa5cf164a312bdcf845157af7093" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f2a7ad9f4cc5f11fa476e69f7ade94859997f849abec10b62917759c86d8dea4 [INFO] running `Command { std: "docker" "start" "-a" "f2a7ad9f4cc5f11fa476e69f7ade94859997f849abec10b62917759c86d8dea4", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling libc v0.2.96 [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-hts v0.2.17 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.17 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-89017fcc3c77166d/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-242a46f1b7d542d2/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-242a46f1b7d542d2/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55b6dc7ac420 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55b6dc7ac420 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55b6dc7ac420 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55b6dc7ac420 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55b6dc7d0f2c - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x55b6dc7a91c5 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x55b6dc7ae68b - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55b6dc7ae68b - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55b6dc7ae68b - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55b6dc7ae161 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55b6dc7aed31 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55b6dc7ae807 - std::panicking::begin_panic_handler::{{closure}}::h95197ccd88846f7a [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/panicking.rs:517:13 [INFO] [stderr] 12: 0x55b6dc7ac8fc - std::sys_common::backtrace::__rust_end_short_backtrace::h7641df9566f7b7d0 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55b6dc7ae799 - rust_begin_unwind [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x55b6dc270861 - core::panicking::panic_fmt::hbe99dddd3092ba3c [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55b6dc2707ad - core::panicking::panic::h3de4db67bd397eb3 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55b6dc2742ad - build_script_build::build_own_htslib::hb02f114b27887576 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:33:5 [INFO] [stderr] 17: 0x55b6dc27470e - build_script_build::main::h4a62b1223ef7baad [INFO] [stderr] at /opt/rustwide/workdir/build.rs:65:9 [INFO] [stderr] 18: 0x55b6dc272deb - core::ops::function::FnOnce::call_once::h36c2bea001970b7d [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55b6dc275eae - std::sys_common::backtrace::__rust_begin_short_backtrace::h09c36d354357934b [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55b6dc272d21 - std::rt::lang_start::{{closure}}::he2308b55c30e8a0b [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/rt.rs:49:18 [INFO] [stderr] 21: 0x55b6dc7af229 - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55b6dc7af229 - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/panicking.rs:401:40 [INFO] [stderr] 23: 0x55b6dc7af229 - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/panicking.rs:365:19 [INFO] [stderr] 24: 0x55b6dc7af229 - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/panic.rs:433:14 [INFO] [stderr] 25: 0x55b6dc7af229 - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/rt.rs:34:21 [INFO] [stderr] 26: 0x55b6dc272d00 - std::rt::lang_start::hee5f1701346e3631 [INFO] [stderr] at /rustc/7c3a44cf5f95fa5cf164a312bdcf845157af7093/library/std/src/rt.rs:48:5 [INFO] [stderr] 27: 0x55b6dc274d5c - main [INFO] [stderr] 28: 0x7fddb49c90b3 - __libc_start_main [INFO] [stderr] 29: 0x55b6dc27105e - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "f2a7ad9f4cc5f11fa476e69f7ade94859997f849abec10b62917759c86d8dea4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f2a7ad9f4cc5f11fa476e69f7ade94859997f849abec10b62917759c86d8dea4", kill_on_drop: false }` [INFO] [stdout] f2a7ad9f4cc5f11fa476e69f7ade94859997f849abec10b62917759c86d8dea4