[INFO] fetching crate d4utils 0.2.17... [INFO] checking d4utils-0.2.17 against master#fc81ad22c453776de16acf9938976930cf8c9401 for pr-77325 [INFO] extracting crate d4utils 0.2.17 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate d4utils 0.2.17 on toolchain fc81ad22c453776de16acf9938976930cf8c9401 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+fc81ad22c453776de16acf9938976930cf8c9401" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4utils 0.2.17 [INFO] finished tweaking crates.io crate d4utils 0.2.17 [INFO] tweaked toml for crates.io crate d4utils 0.2.17 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate crates.io crate d4utils 0.2.17 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+fc81ad22c453776de16acf9938976930cf8c9401" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+fc81ad22c453776de16acf9938976930cf8c9401" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a17ea3dba33cb2215427bce7f67a0181bbaacd9b420c75afde57b5b3e4967177 [INFO] running `Command { std: "docker" "start" "-a" "a17ea3dba33cb2215427bce7f67a0181bbaacd9b420c75afde57b5b3e4967177", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a17ea3dba33cb2215427bce7f67a0181bbaacd9b420c75afde57b5b3e4967177", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a17ea3dba33cb2215427bce7f67a0181bbaacd9b420c75afde57b5b3e4967177", kill_on_drop: false }` [INFO] [stdout] a17ea3dba33cb2215427bce7f67a0181bbaacd9b420c75afde57b5b3e4967177 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+fc81ad22c453776de16acf9938976930cf8c9401" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 96e0a1fcce6dde47e1e11aa72c8fa4029a7c9607999f1c5e7d2d5099acc9272e [INFO] running `Command { std: "docker" "start" "-a" "96e0a1fcce6dde47e1e11aa72c8fa4029a7c9607999f1c5e7d2d5099acc9272e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.94 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling serde v1.0.125 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling syn v1.0.72 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling serde_derive v1.0.125 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.4 [INFO] [stderr] Compiling memoffset v0.6.3 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Checking aho-corasick v0.7.18 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking crossbeam-epoch v0.9.4 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Checking regex v1.5.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.2.17 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling d4-hts v0.2.17 [INFO] [stderr] Compiling d4-bigwig v0.2.17 [INFO] [stderr] error: failed to run custom build command for `d4-bigwig v0.2.17` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-bigwig-9f00b5239b5b57b8/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + cd /opt/rustwide/target/debug/build/d4-bigwig-159f78663ea3370f/out [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-bigwig-159f78663ea3370f/out/libBigWig [INFO] [stderr] + git clone -b 0.4.4 https://github.com/dpryan79/libBigWig [INFO] [stderr] Cloning into 'libBigWig'... [INFO] [stderr] fatal: unable to access 'https://github.com/dpryan79/libBigWig/': Could not resolve host: github.com [INFO] [stderr] + cd libBigWig [INFO] [stderr] build-lib.sh: line 12: cd: libBigWig: No such file or directory [INFO] [stderr] + perl -i -pe s/-lcurl//g Makefile [INFO] [stderr] Can't open Makefile: No such file or directory. [INFO] [stderr] ++ echo x86_64-unknown-linux-gnu [INFO] [stderr] ++ grep musl [INFO] [stderr] + '[' '!' -z ']' [INFO] [stderr] + curl https://zlib.net/zlib-1.2.11.tar.gz [INFO] [stderr] + tar xz [INFO] [stderr] % Total % Received % Xferd Average Speed Time Time Time Current [INFO] [stderr] Dload Upload Total Spent Left Speed [INFO] [stderr] 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0curl: (6) Could not resolve host: zlib.net [INFO] [stderr] [INFO] [stderr] gzip: stdin: unexpected end of file [INFO] [stderr] tar: Child returned status 1 [INFO] [stderr] tar: Error is not recoverable: exiting now [INFO] [stderr] + cd zlib-1.2.11 [INFO] [stderr] build-lib.sh: line 29: cd: zlib-1.2.11: No such file or directory [INFO] [stderr] + is_musl [INFO] [stderr] ++ echo x86_64-unknown-linux-gnu [INFO] [stderr] ++ grep musl [INFO] [stderr] + '[' '!' -z ']' [INFO] [stderr] + return 1 [INFO] [stderr] + ./configure [INFO] [stderr] build-lib.sh: line 30: ./configure: No such file or directory [INFO] [stderr] + make [INFO] [stderr] make: *** No targets specified and no makefile found. Stop. [INFO] [stderr] + cp libz.a .. [INFO] [stderr] cp: cannot stat 'libz.a': No such file or directory [INFO] [stderr] + cd .. [INFO] [stderr] + CFLAGS='-DNOCURL -O3 -Izlib-1.2.11' [INFO] [stderr] + make -j8 lib-static [INFO] [stderr] make: *** No rule to make target 'lib-static'. Stop. [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build-lib.sh\", lib_root.to_str().unwrap(),\n \"0.4.4\"]).spawn().expect(\"Unable to build libBigWig\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-bigwig-0.2.17/build.rs:25:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55bfc4c382f0 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55bfc4c382f0 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55bfc4c382f0 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55bfc4c382f0 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55bfc4c5ce1c - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x55bfc4c35265 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x55bfc4c3a66b - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55bfc4c3a66b - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55bfc4c3a66b - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55bfc4c3a141 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55bfc4c3ad11 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55bfc4c3a7e7 - std::panicking::begin_panic_handler::{{closure}}::h95197ccd88846f7a [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:517:13 [INFO] [stderr] 12: 0x55bfc4c387cc - std::sys_common::backtrace::__rust_end_short_backtrace::h7641df9566f7b7d0 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55bfc4c3a779 - rust_begin_unwind [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x55bfc4708931 - core::panicking::panic_fmt::hbe99dddd3092ba3c [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55bfc470887d - core::panicking::panic::h3de4db67bd397eb3 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55bfc470bb1a - build_script_build::main::hd9f97056ada9f926 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-bigwig-0.2.17/build.rs:25:5 [INFO] [stderr] 17: 0x55bfc470a02b - core::ops::function::FnOnce::call_once::h6cd1c009cffcfdf2 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 18: 0x55bfc4709efe - std::sys_common::backtrace::__rust_begin_short_backtrace::hed9c31c37d36a8dc [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 19: 0x55bfc470a461 - std::rt::lang_start::{{closure}}::hf5a960e9632920cc [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/rt.rs:49:18 [INFO] [stderr] 20: 0x55bfc4c3b309 - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 21: 0x55bfc4c3b309 - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:401:40 [INFO] [stderr] 22: 0x55bfc4c3b309 - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:365:19 [INFO] [stderr] 23: 0x55bfc4c3b309 - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panic.rs:433:14 [INFO] [stderr] 24: 0x55bfc4c3b309 - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/rt.rs:34:21 [INFO] [stderr] 25: 0x55bfc470a440 - std::rt::lang_start::h4399e98e0333be3c [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/rt.rs:48:5 [INFO] [stderr] 26: 0x55bfc470bd3c - main [INFO] [stderr] 27: 0x7f6b16fe40b3 - __libc_start_main [INFO] [stderr] 28: 0x55bfc470912e - _start [INFO] [stderr] 29: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "96e0a1fcce6dde47e1e11aa72c8fa4029a7c9607999f1c5e7d2d5099acc9272e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "96e0a1fcce6dde47e1e11aa72c8fa4029a7c9607999f1c5e7d2d5099acc9272e", kill_on_drop: false }` [INFO] [stdout] 96e0a1fcce6dde47e1e11aa72c8fa4029a7c9607999f1c5e7d2d5099acc9272e