[INFO] cloning repository https://github.com/Axect/Galmorph [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Axect/Galmorph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 21de14073b013984b7f1daaaffb0d32e045eddb8 [INFO] checking Axect/Galmorph against master#fc81ad22c453776de16acf9938976930cf8c9401 for pr-77325 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph" "/workspace/builds/worker-11/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Axect/Galmorph on toolchain fc81ad22c453776de16acf9938976930cf8c9401 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+fc81ad22c453776de16acf9938976930cf8c9401" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Axect/Galmorph [INFO] finished tweaking git repo https://github.com/Axect/Galmorph [INFO] tweaked toml for git repo https://github.com/Axect/Galmorph written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate git repo https://github.com/Axect/Galmorph already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+fc81ad22c453776de16acf9938976930cf8c9401" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+fc81ad22c453776de16acf9938976930cf8c9401" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 12871ac58c5fce093b01aa84262158d395c8a489e290e840abc54287cb681988 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "12871ac58c5fce093b01aa84262158d395c8a489e290e840abc54287cb681988", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "12871ac58c5fce093b01aa84262158d395c8a489e290e840abc54287cb681988", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "12871ac58c5fce093b01aa84262158d395c8a489e290e840abc54287cb681988", kill_on_drop: false }` [INFO] [stdout] 12871ac58c5fce093b01aa84262158d395c8a489e290e840abc54287cb681988 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+fc81ad22c453776de16acf9938976930cf8c9401" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fa00c5422c2131c67d98ded3d14aedc03c704e25e529aa97ea28906eb643a8e6 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "fa00c5422c2131c67d98ded3d14aedc03c704e25e529aa97ea28906eb643a8e6", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling regex-syntax v0.6.19 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Compiling netcdf-sys v0.3.2 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Compiling peroxide v0.27.0 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking json v0.12.4 [INFO] [stderr] Checking puruspe v0.1.4 [INFO] [stderr] Compiling puruda-macro v0.1.1 [INFO] [stderr] Checking order-stat v0.1.3 [INFO] [stderr] Compiling peroxide-ad v0.1.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling fitsio-sys v0.3.0 [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking bstr v0.2.13 [INFO] [stderr] Checking getrandom v0.1.15 [INFO] [stderr] Checking blas-sys v0.7.1 [INFO] [stderr] Checking lapack-sys v0.12.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking fitsio v0.16.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking lapack v0.16.0 [INFO] [stderr] Checking blas v0.20.0 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking puruda v0.1.0 [INFO] [stderr] Checking rand_distr v0.3.0 [INFO] [stderr] Compiling regex v1.4.0 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-2811d319d1a93dcd/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5587ac5e7f60 - std::backtrace_rs::backtrace::libunwind::trace::h1037ca7e6eeef65c [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5587ac5e7f60 - std::backtrace_rs::backtrace::trace_unsynchronized::haaefac1bc3669450 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5587ac5e7f60 - std::sys_common::backtrace::_print_fmt::h863a6f5e6d995885 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5587ac5e7f60 - ::fmt::h767e17e1aa7df6a8 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5587ac6064ac - core::fmt::write::h7aa6cd0067dca82a [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/core/src/fmt/mod.rs:1110:17 [INFO] [stderr] 5: 0x5587ac5e5375 - std::io::Write::write_fmt::h4c802b6f761026c1 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/io/mod.rs:1584:15 [INFO] [stderr] 6: 0x5587ac5e9fcb - std::sys_common::backtrace::_print::h2769edb26a7eb606 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5587ac5e9fcb - std::sys_common::backtrace::print::ha71f3549862b4cb6 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5587ac5e9fcb - std::panicking::default_hook::{{closure}}::h95488a3bade217f6 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5587ac5e9aa1 - std::panicking::default_hook::h290aa602c0fb11df [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5587ac5ea671 - std::panicking::rust_panic_with_hook::hf32c4fa635e215f2 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x5587ac536ab3 - std::panicking::begin_panic::{{closure}}::hcdbc636541a09154 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x5587ac542a69 - std::sys_common::backtrace::__rust_end_short_backtrace::h64add7dacb811b07 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5587ac5369e9 - std::panicking::begin_panic::h748364cd2a2127ca [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x5587ac3e2da7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h3196d4aa5a5794f8 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x5587ac3e45db - build_script_build::main::heee320ed9e22193f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x5587ac3e760b - core::ops::function::FnOnce::call_once::h21629ae22416e63b [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x5587ac3eef1e - std::sys_common::backtrace::__rust_begin_short_backtrace::h9ce08a1ac9825627 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x5587ac3ef0f1 - std::rt::lang_start::{{closure}}::h97a2d0f9f2bd8e48 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/rt.rs:49:18 [INFO] [stderr] 19: 0x5587ac5eab69 - core::ops::function::impls:: for &F>::call_once::h04259e4a34d07c2f [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x5587ac5eab69 - std::panicking::try::do_call::hb8da45704d5cfbbf [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x5587ac5eab69 - std::panicking::try::h4beadc19a78fec52 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x5587ac5eab69 - std::panic::catch_unwind::hc58016cd36ba81a4 [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/panic.rs:433:14 [INFO] [stderr] 23: 0x5587ac5eab69 - std::rt::lang_start_internal::hc51399759a90501a [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/rt.rs:34:21 [INFO] [stderr] 24: 0x5587ac3ef0d0 - std::rt::lang_start::h38b7b3a56c40c8aa [INFO] [stderr] at /rustc/fc81ad22c453776de16acf9938976930cf8c9401/library/std/src/rt.rs:48:5 [INFO] [stderr] 25: 0x5587ac3e5acc - main [INFO] [stderr] 26: 0x7f1cd44490b3 - __libc_start_main [INFO] [stderr] 27: 0x5587ac3ddf0e - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "fa00c5422c2131c67d98ded3d14aedc03c704e25e529aa97ea28906eb643a8e6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fa00c5422c2131c67d98ded3d14aedc03c704e25e529aa97ea28906eb643a8e6", kill_on_drop: false }` [INFO] [stdout] fa00c5422c2131c67d98ded3d14aedc03c704e25e529aa97ea28906eb643a8e6