[INFO] fetching crate netcdf 0.5.2... [INFO] checking netcdf-0.5.2 against try#55b3f428b4fac6790b1e8492e0b91ff2d80aec7c for pr-77035 [INFO] extracting crate netcdf 0.5.2 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate netcdf 0.5.2 on toolchain 55b3f428b4fac6790b1e8492e0b91ff2d80aec7c [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+55b3f428b4fac6790b1e8492e0b91ff2d80aec7c" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf 0.5.2 [INFO] finished tweaking crates.io crate netcdf 0.5.2 [INFO] tweaked toml for crates.io crate netcdf 0.5.2 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate netcdf 0.5.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+55b3f428b4fac6790b1e8492e0b91ff2d80aec7c" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+55b3f428b4fac6790b1e8492e0b91ff2d80aec7c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b1d860a36fa07ca39b365cd6befa8facd20e659e6d6f5dad950c266416a665ae [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b1d860a36fa07ca39b365cd6befa8facd20e659e6d6f5dad950c266416a665ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b1d860a36fa07ca39b365cd6befa8facd20e659e6d6f5dad950c266416a665ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b1d860a36fa07ca39b365cd6befa8facd20e659e6d6f5dad950c266416a665ae", kill_on_drop: false }` [INFO] [stdout] b1d860a36fa07ca39b365cd6befa8facd20e659e6d6f5dad950c266416a665ae [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+55b3f428b4fac6790b1e8492e0b91ff2d80aec7c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0801fabfae278d021a81f150818bc39f3fde4b1363f81fed80a38b57cda5e2c5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0801fabfae278d021a81f150818bc39f3fde4b1363f81fed80a38b57cda5e2c5", kill_on_drop: false }` [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling cc v1.0.61 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling syn v1.0.46 [INFO] [stderr] Compiling netcdf-sys v0.3.3 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-2fc174a7f16eee92/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55af4a9944a7 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55af4a9944a7 - std::backtrace_rs::backtrace::trace_unsynchronized::h86340908ff889faa [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55af4a9944a7 - std::sys_common::backtrace::_print_fmt::h43f85f9b18230404 [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55af4a9944a7 - ::fmt::hc132ae1a5b5aa7cd [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55af4a9b3fcc - core::fmt::write::hdf023a0036d2a25f [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55af4a990f92 - std::io::Write::write_fmt::h8580846154bcb66a [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x55af4a996545 - std::sys_common::backtrace::_print::h7ee55fed88d107a3 [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55af4a996545 - std::sys_common::backtrace::print::h54a7d3e52a524177 [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55af4a996545 - std::panicking::default_hook::{{closure}}::h60921e857bf55a40 [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55af4a99609a - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55af4a996ce1 - std::panicking::rust_panic_with_hook::h8d66bf42b407aaea [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55af4a8f112e - std::panicking::begin_panic::{{closure}}::h29198800b99b99cc [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55af4a8c4919 - std::sys_common::backtrace::__rust_end_short_backtrace::h1a1518782b6dbf4b [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55af4a8f105b - std::panicking::begin_panic::h5d8008c01e7a044e [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55af4a77415b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h0ee934170cc36889 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55af4a775a33 - build_script_build::main::h9046d0c67bfb3330 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55af4a7818db - core::ops::function::FnOnce::call_once::h690f1efe08ee859c [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55af4a778d4e - std::sys_common::backtrace::__rust_begin_short_backtrace::hfde398afc50ac167 [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55af4a780971 - std::rt::lang_start::{{closure}}::h47a121095a162c67 [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55af4a997107 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55af4a997107 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55af4a997107 - std::panicking::try::hb36953ccd24f930d [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55af4a997107 - std::panic::catch_unwind::hbb374cd03beb3824 [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55af4a997107 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55af4a780947 - std::rt::lang_start::hbe40c49b3ec6027f [INFO] [stderr] at /rustc/55b3f428b4fac6790b1e8492e0b91ff2d80aec7c/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55af4a77707a - main [INFO] [stderr] 26: 0x7fa40ab0e0b3 - __libc_start_main [INFO] [stderr] 27: 0x55af4a76f0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "0801fabfae278d021a81f150818bc39f3fde4b1363f81fed80a38b57cda5e2c5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0801fabfae278d021a81f150818bc39f3fde4b1363f81fed80a38b57cda5e2c5", kill_on_drop: false }` [INFO] [stdout] 0801fabfae278d021a81f150818bc39f3fde4b1363f81fed80a38b57cda5e2c5