[INFO] fetching crate syntaxdot-transformers 0.2.0... [INFO] checking syntaxdot-transformers-0.2.0 against master#39b841dfe36f90a7cd111e7f0c55f32594f6e578 for pr-77035 [INFO] extracting crate syntaxdot-transformers 0.2.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate syntaxdot-transformers 0.2.0 on toolchain 39b841dfe36f90a7cd111e7f0c55f32594f6e578 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+39b841dfe36f90a7cd111e7f0c55f32594f6e578" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate syntaxdot-transformers 0.2.0 [INFO] finished tweaking crates.io crate syntaxdot-transformers 0.2.0 [INFO] tweaked toml for crates.io crate syntaxdot-transformers 0.2.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+39b841dfe36f90a7cd111e7f0c55f32594f6e578" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+39b841dfe36f90a7cd111e7f0c55f32594f6e578" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+39b841dfe36f90a7cd111e7f0c55f32594f6e578" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a462115cf0509ae23310d41074378d78a110dc1002081a3f218d06d2bb398b2e [INFO] running `Command { std: "docker" "start" "-a" "a462115cf0509ae23310d41074378d78a110dc1002081a3f218d06d2bb398b2e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a462115cf0509ae23310d41074378d78a110dc1002081a3f218d06d2bb398b2e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a462115cf0509ae23310d41074378d78a110dc1002081a3f218d06d2bb398b2e", kill_on_drop: false }` [INFO] [stdout] a462115cf0509ae23310d41074378d78a110dc1002081a3f218d06d2bb398b2e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+39b841dfe36f90a7cd111e7f0c55f32594f6e578" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 41fba75d5418f9146b1c23556fc8e98700e96a56085a61c2424ed440c73447bd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "41fba75d5418f9146b1c23556fc8e98700e96a56085a61c2424ed440c73447bd", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.81 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling gimli v0.23.0 [INFO] [stderr] Compiling adler v0.2.3 [INFO] [stderr] Compiling adler32 v1.2.0 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rustc-demangle v0.1.18 [INFO] [stderr] Compiling object v0.22.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling openssl-probe v0.1.2 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking smallvec v1.5.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking half v1.6.0 [INFO] [stderr] Compiling serde v1.0.118 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking maplit v1.0.2 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling libloading v0.6.6 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling miniz_oxide v0.3.7 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Compiling syn v1.0.54 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling openssl-sys v0.9.59 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling curl-sys v0.4.39+curl-7.74.0 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling socket2 v0.3.17 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking bzip2 v0.3.3 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling addr2line v0.14.0 [INFO] [stderr] Compiling backtrace v0.3.55 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling thiserror-impl v1.0.22 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling serde_derive v1.0.118 [INFO] [stderr] Compiling hdf5-derive v0.7.0 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling thiserror v1.0.22 [INFO] [stderr] Compiling zip v0.5.9 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-4ecb48f9bbbc5b71/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56142f5244a7 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x56142f5244a7 - std::backtrace_rs::backtrace::trace_unsynchronized::h86340908ff889faa [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x56142f5244a7 - std::sys_common::backtrace::_print_fmt::h43f85f9b18230404 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x56142f5244a7 - ::fmt::hc132ae1a5b5aa7cd [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x56142f543fcc - core::fmt::write::hdf023a0036d2a25f [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x56142f520f92 - std::io::Write::write_fmt::h8580846154bcb66a [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x56142f526545 - std::sys_common::backtrace::_print::h7ee55fed88d107a3 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x56142f526545 - std::sys_common::backtrace::print::h54a7d3e52a524177 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x56142f526545 - std::panicking::default_hook::{{closure}}::h60921e857bf55a40 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x56142f52609a - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x56142f526ce1 - std::panicking::rust_panic_with_hook::h8d66bf42b407aaea [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x56142f48120e - std::panicking::begin_panic::{{closure}}::h9cf47c01b36fed79 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x56142f4549f9 - std::sys_common::backtrace::__rust_end_short_backtrace::h2068e74734611c39 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x56142f48113b - std::panicking::begin_panic::hfa2bd14abc49d96a [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x56142f30415b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h772e0099ed0ccf26 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x56142f305a33 - build_script_build::main::h3b82ebe3fa8fef73 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x56142f3118cb - core::ops::function::FnOnce::call_once::hdf101229a5b60174 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x56142f308dae - std::sys_common::backtrace::__rust_begin_short_backtrace::h3f7b500fe6bc4c80 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x56142f30f4c1 - std::rt::lang_start::{{closure}}::hf0fdf479a6861c57 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x56142f527107 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x56142f527107 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x56142f527107 - std::panicking::try::hb36953ccd24f930d [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x56142f527107 - std::panic::catch_unwind::hbb374cd03beb3824 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x56142f527107 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x56142f30f497 - std::rt::lang_start::h5a54e87b3fa34a48 [INFO] [stderr] at /rustc/39b841dfe36f90a7cd111e7f0c55f32594f6e578/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x56142f30707a - main [INFO] [stderr] 26: 0x7f4e05e320b3 - __libc_start_main [INFO] [stderr] 27: 0x56142f2ff0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "41fba75d5418f9146b1c23556fc8e98700e96a56085a61c2424ed440c73447bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "41fba75d5418f9146b1c23556fc8e98700e96a56085a61c2424ed440c73447bd", kill_on_drop: false }` [INFO] [stdout] 41fba75d5418f9146b1c23556fc8e98700e96a56085a61c2424ed440c73447bd